Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1895 ATGACAACGACCTCTTCCCAGGGTTATCATCAACCCTCGTCGATTGAGGAAGTTCGAACCCTTTGGATTGGGGACTTGCAGTACTGGGTCGACGAAACCTACCTCAGTCACTGCTTCGCTCATACCGGCGAGGTAGTTTCCATAAAGATCATCCGTAATAAGATCACTGGACAACCTGAGGGCTATGGATTTGTGGAGTTTGTTTCCCATGCAGCAGCAGAACGGATTTTGCAGACTTACAATGGGACACAAATGCCTGGAACAGAACAAACTTTCAGGTTGAATTGGGCGTCTTTTGGTATTGGGGAGCGGCGTCCTGATGCTGGGCCTGAGCACTCAATTTTTGTTGGGGATCTAGCACCTGATGTTACAGATTATCTTCTGCAGGAGACATTTCGAACCCATTATCCTTCAGTTAGAGGTGCCAAAGTAGTGACTGATCCTAATACAGGGCGCCCCAAGGGATACGGATTTGTTAAATTTTCTGACGAGACTGAAAGGAATCGTGCTATGACTGAAATGAATGGTGTTTATTGCTCAAGTAGACCAATGCGTATTAGTGCTGCAACACCAAAGAAGACCACTGGTTTTCAACAGCAATATGTTGCAGCTAAAGCTATATATCCAATCCCGGCATATACCACTGCAGTAAACACGCCTCCACCAGATTATGATATGAATAATACCACAATTTTTGTTGGTAATTTGGATCTTAATATCACAGAAGAGGAGCTGAAACAAACCTTTTTGCAATTTGGAGAAATTGTGTCTGTCAAGATTCACACTGGCAAAGGATGTGGTTTTGTTCAATTTGGGACAAGATCATCTGCTGAAGATGCCATTCAGAGGATGCAGGGAAAGATGATTGGTCAACAAGTGGTCCGAATTTCCTGGGGTAGGAGCCTAACGGGAAGACAGGACTTACCTGGTGGCTGGGGGCCACAGATGGATCCAAGTCAATGGAGTGCCTACTATGGGTATGGACAGGGCTATGAAGCCTATGCTTATGGGGCAGCTCATGATCCTTCCTTGTATGCATATGGTGCATATGCTGGTTATACACAGTACCCTCAACAGGTTGAAGGTGCTCAAGATATGGCATCTATGGCTATGCCTAATATGGAACAAAGGGAGGAGTTGTATGAGCCCCTGGCTATGCCCGATGTTGATAAGCTAAACGCTGCATATCTATCAGTACATGGAAATGCCATTTTAGGGCGGTCCCTCTGGCAGAAAACCTCACCATTCTTGCAGCAAGCTTAG 1263 0.4561 MTTTSSQGYHQPSSIEEVRTLWIGDLQYWVDETYLSHCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPDVTDYLLQETFRTHYPSVRGAKVVTDPNTGRPKGYGFVKFSDETERNRAMTEMNGVYCSSRPMRISAATPKKTTGFQQQYVAAKAIYPIPAYTTAVNTPPPDYDMNNTTIFVGNLDLNITEEELKQTFLQFGEIVSVKIHTGKGCGFVQFGTRSSAEDAIQRMQGKMIGQQVVRISWGRSLTGRQDLPGGWGPQMDPSQWSAYYGYGQGYEAYAYGAAHDPSLYAYGAYAGYTQYPQQVEGAQDMASMAMPNMEQREELYEPLAMPDVDKLNAAYLSVHGNAILGRSLWQKTSPFLQQA 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1895 420 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 12 305 - -
Glsi14g1895 420 FunFam Polyadenylate-binding protein RBP47B 100 202 - -
Glsi14g1895 420 CDD RRM2_SECp43_like 111 190 - -
Glsi14g1895 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 229 301 IPR000504 GO:0003723
Glsi14g1895 420 FunFam Polyadenylate-binding protein RBP47B 18 98 - -
Glsi14g1895 420 SUPERFAMILY RNA-binding domain, RBD 211 330 IPR035979 GO:0003676
Glsi14g1895 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 191 IPR000504 GO:0003723
Glsi14g1895 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 231 294 IPR000504 GO:0003723
Glsi14g1895 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 89 IPR000504 GO:0003723
Glsi14g1895 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 183 IPR000504 GO:0003723
Glsi14g1895 420 FunFam polyadenylate-binding protein RBP45 212 308 - -
Glsi14g1895 420 SUPERFAMILY RNA-binding domain, RBD 18 192 IPR035979 GO:0003676
Glsi14g1895 420 Gene3D - 101 202 IPR012677 -
Glsi14g1895 420 SMART rrm1_1 230 297 IPR000504 GO:0003723
Glsi14g1895 420 SMART rrm1_1 113 187 IPR000504 GO:0003723
Glsi14g1895 420 SMART rrm1_1 20 95 IPR000504 GO:0003723
Glsi14g1895 420 Gene3D - 18 98 IPR012677 -
Glsi14g1895 420 Gene3D - 215 304 IPR012677 -
Glsi14g1895 420 CDD RRM1_SECp43_like 20 100 - -
Glsi14g1895 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 19 99 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1895 Glsi-ChrGlsi14 19306521 19316292 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1895 18 319 Eukaryotic Initiation Factors Gene Family AT2G23350 27.419 1.24e-24 104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi14g1895 14 19306521 19316292 Glsi14g1895 14 19306521 19316292 ECH