Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1894 ATGGCTGAAACTCCTAGGAAGTCTCTTCAATCTCCCACAAAATCCAAACATCAAACGCAATTGGATGCCAAATGCTCACCTTCAGTGACCCCTGTAACCCCACAATCTCTAGCTTCTCGCAGATCGACCCGCCGAAATTCGCTGCGCTTCGATGAAACTTGGGAACATTCATTGGTAACTCCAAAAAAGGGAAGAACCGGGAAGAGTTTCGATTTGAAGAAGTCTCGTCGGTCAATTGATTATGCTGAAGAACCTAGCAAAAATAAAGTGATAACCCGTGGAAGTAGAACTAGGGTAAATAGTTCAATCAAAACAACTACAAAAAAAGAGAATAATGCTGGATCTGCAAAGTGCCAGACATCTACCGCAGGGGGCGAATATTTGAAACGGAGAAATGGGAAAAATTCAGTTGAAGTATCTTTCGCTCCAGCATCGCCTGATCAATCGGAAACTAAGAAGAGGAAGAGGGTTGATGAAAGAACGGTTGTTACTAGAGCTATGGTTGCAAGAAATGGGAAATCTGAGAAGGGGCAAAAGAGCAGCAGGTTGTCTAAGAGACGGGTGTATTATAAAAAAGTGGTATATGATGGGGGTGAGTTTGAAGTGGGCGATGATGTTTATGTGAAAAGAAGAGAAGACGCCACCTCAGATAATGAAGATCCAGAAATGGAGGAATGTAGGTTGTGCTTTAGTTCTGGGAATGATGTTATGATTGAGTGTGATGCATGTTTAAGCGGATTTCATTTGAAATGTTTAACTCCACCATTAAAGGAGGTTCCAGAAGGGGATTGGACATGTGGGTTTTGTGAGGCCCGTAAGATGGGTAGGGACGTTAACTTTCCCATGCCTCCAGAGGGTAAGAAGCTAGTTAGGACAATGAGGGAGAAGCTTCTTTCCAGTGATTTGTGGGCTGCCCACATTGAAAGTATATGGAAAGAAGTAGATGGTAGCTACTGGTGTCGGGCAAGGTGGTATGTTATCCCAGAAGAGACAAATGTTGGGAGACAACCTCATAACCTGCGGAGGGAGCTATATAGAACAAATGATTTTGCAGACATTGAGATGGAATCTGTCCTCAGACATTGCTTTGTCATGACACCCAAAGAATATGCCAAGGCCAACAATGAGGGGGATGATGTTTTCTTTTGTGAATACGAATATGACATTCTTTGGCACAGTTTCAAGCGTATTGCTGAAATTAACAATGAAGAAGAGGATGGTGAAGGGACTGACAGTGATGAAGATTGGAATCTTTGCAAGGAACCAGACTTTGATACAGATGAAGATGTTGAATACGAAGAGGAGAATATAAAAAACTCACAGCCATCAGCAACTTATGCATCAGCTGCAAATCTGTGCAAGGGACGGTTCTTTGGACTTCAAAAGATCGGTACAAAAAAAATTCCACAGTATGTCAGGTCCCACAATCGGACAGAACTGGAGAGAGCAAAGGCTATGCTGCTGTTGGCATCATTGCCTAAATCTTTACCTTGTAGGAATAAAGAAATGGAGGAGATAACTTCATTCATAAAAGGTGCTATTTGTGATGATCAATGTCTGGGACGTTGCTTGTACATCCATGGTGTTCCTGGAACTGGCAAGACAATGAGTGTATTAGCAGTAATGAGGAACTTGAGGTCAGAAGTTGATGCAGGAATCGTAAGACCCTACAGTTTTGTAGAGATTAATGGTCTGAAATTAGCATCACCAGAGAATATTTACAAGGTCATATATGAGGCATTAAATGGGCACAGGGTCAGCTGGAAAAAGGCCCTTCACTTGCTGAATGAGAGATTTGTTGAAGGGAAGAAAACTGGAGCAGAGGCTGACCGACCATGCATTCTGCTTATTGATGAACTTGATCTTCTTGTAACCAGAAACCAGTCGGTTCTTTACAATATTCTTGATTGGCCTACTAAGCCACATTCCAAACTAATTGTGATAGGTATAGCAAATACAATGGATCTTCCAGAGAAGCTACTTCCTCGTATATCAAGTCGAATGGGCATACAGAGGCTTTGCTTTGGTCCATATAATTATCAGCAGCTTCAAGAAATCATTTCAACCCGCCTAAAGGGAATAGATGTATTTGAAAAGCAAGCTATAGAGTTCGCTTCAAGAAAGGTTGCTGCAATCTCAGGTGATGCACGCCGTGCTTTGGAGATTTGTAGACGTGCTGCAGAAATTGCAGATTATCGTATCAAGAAGCTAGTTTCTAATCCTGACTTAGGTACTGCAGGAAAGGGACTTGTCGCTATGGCAGATGTTGAGGCTGCCATCCAAGAAATGTTCCAAGCTCCACATATTCAAGTGATGAGAAGTTGTTCTAGACTTAGCAAAATCTTCCTGACAGCCATGGTGCACGAGCTTTATAAAACGGGAATGGGGGAAACCACTTTTGAAAAGTTGGCAATGACGGTTTCGTGCCTCTGCACTGGCAACGGAGAAGTGTTTCCTGGATATGATACGCTACTGCAAGTGGGCTGTAGGCTAGGGGAATGCAGGATTATTTTATGTGAAGCAGGTGCCAAGCACAGATTGCAAAAGTTACAGCTCAATTTCCCGAGTGATGATGTCGCCTTCGCGTTGAGAAACTGCAAGGATCTACCTTGGTTGGCCAAGTATCTAATTTAG 2634 0.4275 MAETPRKSLQSPTKSKHQTQLDAKCSPSVTPVTPQSLASRRSTRRNSLRFDETWEHSLVTPKKGRTGKSFDLKKSRRSIDYAEEPSKNKVITRGSRTRVNSSIKTTTKKENNAGSAKCQTSTAGGEYLKRRNGKNSVEVSFAPASPDQSETKKRKRVDERTVVTRAMVARNGKSEKGQKSSRLSKRRVYYKKVVYDGGEFEVGDDVYVKRREDATSDNEDPEMEECRLCFSSGNDVMIECDACLSGFHLKCLTPPLKEVPEGDWTCGFCEARKMGRDVNFPMPPEGKKLVRTMREKLLSSDLWAAHIESIWKEVDGSYWCRARWYVIPEETNVGRQPHNLRRELYRTNDFADIEMESVLRHCFVMTPKEYAKANNEGDDVFFCEYEYDILWHSFKRIAEINNEEEDGEGTDSDEDWNLCKEPDFDTDEDVEYEEENIKNSQPSATYASAANLCKGRFFGLQKIGTKKIPQYVRSHNRTELERAKAMLLLASLPKSLPCRNKEMEEITSFIKGAICDDQCLGRCLYIHGVPGTGKTMSVLAVMRNLRSEVDAGIVRPYSFVEINGLKLASPENIYKVIYEALNGHRVSWKKALHLLNERFVEGKKTGAEADRPCILLIDELDLLVTRNQSVLYNILDWPTKPHSKLIVIGIANTMDLPEKLLPRISSRMGIQRLCFGPYNYQQLQEIISTRLKGIDVFEKQAIEFASRKVAAISGDARRALEICRRAAEIADYRIKKLVSNPDLGTAGKGLVAMADVEAAIQEMFQAPHIQVMRSCSRLSKIFLTAMVHELYKTGMGETTFEKLAMTVSCLCTGNGEVFPGYDTLLQVGCRLGECRIILCEAGAKHRLQKLQLNFPSDDVAFALRNCKDLPWLAKYLI 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1894 877 Gene3D - 673 765 - -
Glsi14g1894 877 Pfam BAH domain 306 395 IPR001025 GO:0003682
Glsi14g1894 877 MobiDBLite consensus disorder prediction 44 72 - -
Glsi14g1894 877 SMART PHD_3 225 270 IPR001965 -
Glsi14g1894 877 Pfam AAA lid domain 698 731 IPR041083 -
Glsi14g1894 877 MobiDBLite consensus disorder prediction 1 43 - -
Glsi14g1894 877 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 279 IPR013083 -
Glsi14g1894 877 Gene3D - 290 474 IPR043151 -
Glsi14g1894 877 MobiDBLite consensus disorder prediction 1 72 - -
Glsi14g1894 877 SMART BAH_4 198 398 IPR001025 GO:0003682
Glsi14g1894 877 MobiDBLite consensus disorder prediction 131 158 - -
Glsi14g1894 877 ProSiteProfiles BAH domain profile. 281 398 IPR001025 GO:0003682
Glsi14g1894 877 Pfam ATPase family associated with various cellular activities (AAA) 525 670 IPR003959 GO:0005524|GO:0016887
Glsi14g1894 877 Gene3D - 476 672 IPR027417 -
Glsi14g1894 877 SMART AAA_5 520 674 IPR003593 GO:0016887
Glsi14g1894 877 Pfam PHD-finger 226 271 IPR019787 -
Glsi14g1894 877 FunFam Origin recognition complex subunit 1 477 676 - -
Glsi14g1894 877 FunFam Origin recognition complex subunit 1 289 479 - -
Glsi14g1894 877 FunFam Origin recognition complex subunit 1 673 765 - -
Glsi14g1894 877 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 330 871 - -
Glsi14g1894 877 FunFam Origin recognition complex subunit 1 221 288 - -
Glsi14g1894 877 SUPERFAMILY FYVE/PHD zinc finger 213 274 IPR011011 -
Glsi14g1894 877 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 490 743 IPR027417 -
Glsi14g1894 877 ProSiteProfiles Zinc finger PHD-type profile. 223 272 IPR019787 -
Glsi14g1894 877 ProSitePatterns Zinc finger PHD-type signature. 226 269 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1894 Glsi-ChrGlsi14 19298379 19305825 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1894 7 876 Core DNA Replication Machinery Family AT4G14700 60.726 0.0 1014
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Glsi14g1894 AAA 2.9e-20 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi14g1894 14 19298379 19305825 Glsi14g1894 14 19298379 19305825 ECH