Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1888 ATGAGGAAGCCCGAGCTCTCCGGAAAAAACAAGTGCAACAACAAGCTTAGAAAGGGGTTGTGGTCACCAGAAGAAGATGACAAACTCATGAGCTACATGCTAAACAATGGACAAGGTTGTTGGAGTGATGTGGCTAGAAATGCTGGCTTGCAAAGGTGTGGCAAAAGTTGTCGGCTTCGATGGATCAATTACCTGAGGCCTGATCTTAAACGAGGCGCATTCTCATCCCAGGAAGAGCAACTCATCATTCACTTGCATTCCCTGCTTGGCAACAGATGGTCTCAAATAGCTGCGCGCTTGCCTGGGCGAACTGACAACGAAATCAAGAACTTTTGGAACTCGACTATTAAAAAAAGACTCAAGAACTTGTTCACAGCCACGACCTCACCCAACGACCCTAATCAAGACCTCAATTTGGGAGGGTTTATGTCTATGTTGAATTCATCAATGGATGGGCCAAACATGCCTGCCGTGGGCGGATTTTTCAACGGTACATGGCCATGCTTCACACAAAATGCTTTTTATTTAGAAAATGGAGGGTTTGGGACAGAAGGGGAGCTGTTTGTTCCTCCTACTTCTGATAACCTGACCCCGTACCATGGTTACTTTGATAATATAAACACAGCTGAAAATGGAGCTGAGGTGGACAATTTATTTCAACAAGAATTAACTATGGATGAGTGGGACTTGGGGCATTTGATGAAAGATATTTCCTCCACTCCCTTCCTCCCATTTTTTGAATCTTCTGGGGATCTCTCTTGA 762 0.4475 MRKPELSGKNKCNNKLRKGLWSPEEDDKLMSYMLNNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSSQEEQLIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNLFTATTSPNDPNQDLNLGGFMSMLNSSMDGPNMPAVGGFFNGTWPCFTQNAFYLENGGFGTEGELFVPPTSDNLTPYHGYFDNINTAENGAEVDNLFQQELTMDEWDLGHLMKDISSTPFLPFFESSGDLS 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1888 253 Gene3D - 15 71 - -
Glsi14g1888 253 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 120 IPR017930 -
Glsi14g1888 253 Gene3D - 72 137 - -
Glsi14g1888 253 PANTHER MYB DOMAIN PROTEIN 55 12 135 - -
Glsi14g1888 253 FunFam MYB transcription factor 73 120 - -
Glsi14g1888 253 CDD SANT 21 65 IPR001005 -
Glsi14g1888 253 ProSiteProfiles Myb-like domain profile. 66 116 IPR001005 -
Glsi14g1888 253 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 65 IPR017930 -
Glsi14g1888 253 ProSiteProfiles Myb-like domain profile. 13 65 IPR001005 -
Glsi14g1888 253 SMART sant 70 118 IPR001005 -
Glsi14g1888 253 SMART sant 17 67 IPR001005 -
Glsi14g1888 253 CDD SANT 73 113 IPR001005 -
Glsi14g1888 253 SUPERFAMILY Homeodomain-like 16 112 IPR009057 -
Glsi14g1888 253 FunFam MYB transcription factor 15 71 - -
Glsi14g1888 253 Pfam Myb-like DNA-binding domain 71 114 IPR001005 -
Glsi14g1888 253 Pfam Myb-like DNA-binding domain 18 65 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1888 Glsi-ChrGlsi14 19081144 19082118 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1888 1 248 MYB Transcription Factor Family AT5G12870 46.643 1.92e-70 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi14g1888 Myb_DNA-binding 3.4e-12 CL0123