Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1883 ATGGGAGCTCGTTGCTCTAAATTCTCTCTCTGCTGGTGGCCGTCTAATATCAAATCAAATCTTCACGGCTTGTCTGATAATGATGATGGGAACAAGAATGAGAAGGATTCTTTACCTGGGTTCACAGAATACAGCTTGGATGAACTAAAATCTGCCACTTCGGGCTTTTCACCTGACAACATTGTCTCAGAGCACGGTGAGAAAGCTCCCAATGTTGTATATAAAGGAAGGGTTGAAGCTGATAGGTGGATTGCTGTGAAGCGCTTCAACAAATCAGCTTGGCCTGATTCTCGACAATTCCTAGAGGAAGCACGAGTGGTGGGGCAGCTGCGGAATGAGCGATTAGCTAACTTAATTGGGTGTTGCTGCGAAGAAGAAGAGAGATTACTCGTTGCAGAGTTTATGCCCAATGAAACTCTTTCGAAACATCTTTTTCACTGGGAGGCCCAGCCTATGAAATGGGCTATGAGGCTGAGAGTGGCCTTGTATTTAGCACAAGCGTTGGAATACTGCAGTAGCAGAGGAAGGGGTTTGTACCATGATCTTAATGCTTATAGAATTTTGTTTGATCAGGATGGTAACCCTAGACTTTCTTGTTTTGGGCTCATGAAGAACAGCAGAGATGGCAGAAGCTACAGTACAAATTTAGCCTTCACCCCTCCAGAGTACTTGAGGACAGGAAGAATCACTCCAGAAAGTGTGGTTTACAGTTTTGGCACCCTTCTGCTTGATCTTCTCAGTGGCAAGCATATCCCACCCAGTCATGCACTCGACCTTATAAGAGGCAAAAATTTTCTGATGCTGATGGATTCATGTTTGGAAAGTCATTTTTCAAATGATGATGGAACTGAACTAGTGAGATTAGCCTCACGTTGTTTACAGTATGAACCTCGTGAGAGGCCAAATGCAAAGTCACTTGTGACTGCTCTAATTCCTCTTCAGAAAGAAACTTCAGTATCATCATATGTTTTAATGGGCATACCAGATGGGAGTGCATCAACAAAGGAAACAGTTTCATTGACACCTTTTGGTGAAGCTTGTTCTAAAAGAGATCTCACTGCAATACACGAAATTTTGGAAAAGGTGGGGTACAAGGATGATGAAGAAGTTGCGAATGAGCTATCCTTCCAAATGTGGACAAATCAAATTCAAGAAACACTAAATGCTAAGAAACGAGGAGACTCTGCTTTTCGTGCTAAAGACTTCTTTACAGCCATCGACTGTTATACACATTTCATCGATGGTGGGACGATGGTATCACCAACAGTATATGCCAGGCGCTGCTTCTGCTACCTGATGAATGAGATGCCACAAGAAGCTCTCGGAGATGCCATGCATGCTCAATCAGTATCTCCCACTTGGCCCACTTCTTTTTATCTTCAAGCAGCCGCCCTCTTCACCCTTGGGATGGAAAACGATGCACACGAAAGTCTTAAAGACGGCACAATGCTGGAGACCAGAAAGAATATAAATTGA 1476 0.4356 MGARCSKFSLCWWPSNIKSNLHGLSDNDDGNKNEKDSLPGFTEYSLDELKSATSGFSPDNIVSEHGEKAPNVVYKGRVEADRWIAVKRFNKSAWPDSRQFLEEARVVGQLRNERLANLIGCCCEEEERLLVAEFMPNETLSKHLFHWEAQPMKWAMRLRVALYLAQALEYCSSRGRGLYHDLNAYRILFDQDGNPRLSCFGLMKNSRDGRSYSTNLAFTPPEYLRTGRITPESVVYSFGTLLLDLLSGKHIPPSHALDLIRGKNFLMLMDSCLESHFSNDDGTELVRLASRCLQYEPRERPNAKSLVTALIPLQKETSVSSYVLMGIPDGSASTKETVSLTPFGEACSKRDLTAIHEILEKVGYKDDEEVANELSFQMWTNQIQETLNAKKRGDSAFRAKDFFTAIDCYTHFIDGGTMVSPTVYARRCFCYLMNEMPQEALGDAMHAQSVSPTWPTSFYLQAAALFTLGMENDAHESLKDGTMLETRKNIN 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1883 491 SUPERFAMILY TPR-like 387 486 IPR011990 GO:0005515
Glsi14g1883 491 SUPERFAMILY Protein kinase-like (PK-like) 37 314 IPR011009 -
Glsi14g1883 491 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 21 489 IPR045845 GO:0004672|GO:0009742
Glsi14g1883 491 Gene3D Phosphorylase Kinase; domain 1 30 134 - -
Glsi14g1883 491 Pfam Protein tyrosine and serine/threonine kinase 73 310 IPR001245 GO:0004672|GO:0006468
Glsi14g1883 491 FunFam probable serine/threonine-protein kinase At5g41260 136 327 - -
Glsi14g1883 491 FunFam probable serine/threonine-protein kinase At4g35230 384 491 - -
Glsi14g1883 491 Gene3D Tetratricopeptide repeat domain 384 490 IPR011990 GO:0005515
Glsi14g1883 491 ProSiteProfiles Protein kinase domain profile. 59 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi14g1883 491 FunFam probable serine/threonine-protein kinase At4g35230 31 134 - -
Glsi14g1883 491 Gene3D Transferase(Phosphotransferase) domain 1 136 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1883 Glsi-ChrGlsi14 19047980 19052460 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1883 14 310 Glycoside Hydrolase AT3G07070 32.615 2.16e-38 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Glsi14g1883 PK_Tyr_Ser-Thr 1.5e-27 CL0016