Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1872 ATGTCATCTGCGACGGCATCGTATTGGTGTCATAGGTGCACCCGGTTTGTTAGCCTCTTGAGTCAAGACCACATCGCTTGCCCACTCTGTGAAAGTGCCTTCGTCGAAGAGATCCAGAGCAACCCATCATCGGACGATCATATCAGCCCCTTTCCAGCTGCGCCCATGCCCATGTTCCCTGATGAAGGTCAAGGTTCCTTTAATTTAAGGAGACAAGGGCTCCGGCGAAGACGCCGCCACGCAGGCAGCCGGTCTCCCTTTAACCCAGTTATCGTTCTCCGGGGACACGCTGATGGTGGTTATAGTGAGAGAAGTAGTGGCGTCGAATTGTACTATGATGATGGAGATGGCTCCGGTCTCCGACCTTTGCCGCTGGCCATGTCAGAGTTCTTGATGGGGTCAGGCTTCGATCGGTTGCTGGAGCAGTTTGCCCAGGTCGAAACTAATGGGTTTGGGCGGCCGGAGAACCCGCCAGCGTCCAAAACGGCCATTGAGTCAATGCCGACGATTGAGATTGTGGAGGCCCATGTGGGTATGGATACATACTGTGCCATCTGTAAAGAAGCGTTTGAGCTGGGTTCAGAGGCGCGTGAAATGCCTTGCAAGCACATTTACCATTCGGATTGCATTCTCCCGTGGCTTTCAATGCGTAATTCGTGTCCTGTGTGCCGTGACGAGCTGCCTTCGGATCGAAACCCACTGGAAAGCAGAATATCAGGGCAAATCGACGAAGAAACGGTAGGATTGGCAATATGGAGGCTACCAGGTGGCGGGTTTGCCGTTGGAAGATTTTCTGGCAGCAGCAGCGATGCGGATAGTCATTTACCAGTTGTATACACAGAAATGGACGGCGGGCTCAATACGAATGGAGCTCCTAGAAGAAATTCCCTTGCAATGGGAAGCATTGGAGTTAGCGAAAGTCGTGGACTTGGCAGAATATTTCGCAATTTCTTGTCATTCTTTGGGAGGGTTGGGTCGAGGTCAAGTTCATCTTCCTCAGAACTTGGGTCCATGAGTAGAAGCCTTAGCCAATTGAGTTCATTATTCAGTAGGAACTCGCGGAGGCGTACGAGAAACTGGGTCTTGGAAGATTAA 1095 0.516 MSSATASYWCHRCTRFVSLLSQDHIACPLCESAFVEEIQSNPSSDDHISPFPAAPMPMFPDEGQGSFNLRRQGLRRRRRHAGSRSPFNPVIVLRGHADGGYSERSSGVELYYDDGDGSGLRPLPLAMSEFLMGSGFDRLLEQFAQVETNGFGRPENPPASKTAIESMPTIEIVEAHVGMDTYCAICKEAFELGSEAREMPCKHIYHSDCILPWLSMRNSCPVCRDELPSDRNPLESRISGQIDEETVGLAIWRLPGGGFAVGRFSGSSSDADSHLPVVYTEMDGGLNTNGAPRRNSLAMGSIGVSESRGLGRIFRNFLSFFGRVGSRSSSSSSELGSMSRSLSQLSSLFSRNSRRRTRNWVLED 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1872 364 Pfam zinc-ribbon 7 38 IPR039525 GO:0061630
Glsi14g1872 364 ProSiteProfiles Zinc finger RING-type profile. 183 224 IPR001841 -
Glsi14g1872 364 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 85 228 - -
Glsi14g1872 364 SMART ring_2 183 223 IPR001841 -
Glsi14g1872 364 CDD RING-H2_RNF126-like 183 224 - -
Glsi14g1872 364 Pfam Protein of unknown function (DUF1117) 247 354 IPR010543 -
Glsi14g1872 364 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 230 IPR013083 -
Glsi14g1872 364 Pfam Ring finger domain 182 224 IPR001841 -
Glsi14g1872 364 FunFam E3 ubiquitin-protein ligase RING1-like 145 230 - -
Glsi14g1872 364 SUPERFAMILY RING/U-box 163 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1872 Glsi-ChrGlsi14 18892461 18893555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1872 122 235 C3H Transcription Factor Family AT5G01980 45.614 3.81e-28 113