Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1841 ATGAGGAGGGACAGCAAAGCCCCACGCGTAGCCATCTTGTTTTGGGAAGCACATGGGAATGGTCTCTGTAGATGGGTGGACGTGACAACAGAACCTGCTCTCTGTTTTTTCTCACTTTGGTCGTCTCTCATCCCCAAATCTTCGTCTATTCACTCTCTCTGTTTGTTTTCCAAAATGGCTATTTCTACTGTGGTCTGCATTGCCTCTCTTATCTCAATATTCATGTGGATGGTGGAGGCCAGAATTCCAGGGGTTTACTCTGGGGGTGCTTGGGAAAGTGCTCATGCCACCTTCTATGGAGGATCCGATGCTTCCGGCACCATGGGTGGAGCTTGTGGGTACGGAAACCTTTACAGCCAAGGGTACGGAGTGAACACAGCGGCATTGAGCACTGCACTATTCAACAATGGGCTGAGCTGCGGTGCGTGCTTTGAGATAAAGTGCGCAAATGACAGAGAATGGTGTCATTCGGGAAGCCCATCCATCTTCGTTACAGCCACCAACTTCTGCCCACCCAACTATGCCCTTCCAAACGACAATGGCGGGTGGTGCAACCCACCTCGTCCACACTTTGACCTTGCCATGCCCATGTTCCTCAAGATTGCCGAGTACCGTGCCGGTATCGTCCCTGTCGCCTATCGCCGAGTGCCATGCAGAAAGCAGGGTGGGATAAGGTTCACCATCAACGGCTTCCGTTACTTCAATCTGGTTCTGGTCACCAACGTGGCGGGTGCAGGGGATATCGTGCGGGCTTACGTGAAGGGGTCGAGAACGGAATGGATGCCCTTGAGCCGAAACTGGGGTCAAAATTGGCAGTCAAACGCAGTGTTGGTGGGGCAGTCGTTGTCGTTTAGGATCACAGGGAGTGACAGGCGAACTTCCACCTCTTGGAACATAGTCCCATCCAATTGGCAATTCGGGCAAACTTTCACTGGAAAGAACTTCCGGGTTTGA 954 0.5231 MRRDSKAPRVAILFWEAHGNGLCRWVDVTTEPALCFFSLWSSLIPKSSSIHSLCLFSKMAISTVVCIASLISIFMWMVEARIPGVYSGGAWESAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDREWCHSGSPSIFVTATNFCPPNYALPNDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRVPCRKQGGIRFTINGFRYFNLVLVTNVAGAGDIVRAYVKGSRTEWMPLSRNWGQNWQSNAVLVGQSLSFRITGSDRRTSTSWNIVPSNWQFGQTFTGKNFRV 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1841 317 Gene3D - 79 219 IPR036908 -
Glsi14g1841 317 FunFam Expansin 80 219 - -
Glsi14g1841 317 PANTHER EXPANSIN-A15 71 315 IPR002963 GO:0009664
Glsi14g1841 317 SUPERFAMILY Barwin-like endoglucanases 90 241 IPR036908 -
Glsi14g1841 317 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 233 312 IPR007117 -
Glsi14g1841 317 Pfam Lytic transglycolase 126 213 IPR009009 -
Glsi14g1841 317 CDD DPBB_EXPA_N 91 218 - -
Glsi14g1841 317 PRINTS Expansin/Lol pI family signature 298 312 IPR007118 GO:0005576
Glsi14g1841 317 PRINTS Expansin/Lol pI family signature 206 222 IPR007118 GO:0005576
Glsi14g1841 317 PRINTS Expansin/Lol pI family signature 130 148 IPR007118 GO:0005576
Glsi14g1841 317 PRINTS Expansin/Lol pI family signature 108 126 IPR007118 GO:0005576
Glsi14g1841 317 PRINTS Expansin/Lol pI family signature 90 105 IPR007118 GO:0005576
Glsi14g1841 317 PRINTS Expansin/Lol pI family signature 260 274 IPR007118 GO:0005576
Glsi14g1841 317 PRINTS Expansin signature 162 172 IPR002963 GO:0009664
Glsi14g1841 317 PRINTS Expansin signature 298 314 IPR002963 GO:0009664
Glsi14g1841 317 PRINTS Expansin signature 121 135 IPR002963 GO:0009664
Glsi14g1841 317 PRINTS Expansin signature 269 290 IPR002963 GO:0009664
Glsi14g1841 317 PRINTS Expansin signature 181 198 IPR002963 GO:0009664
Glsi14g1841 317 PRINTS Expansin signature 234 255 IPR002963 GO:0009664
Glsi14g1841 317 PRINTS Expansin signature 148 159 IPR002963 GO:0009664
Glsi14g1841 317 PRINTS Expansin signature 222 234 IPR002963 GO:0009664
Glsi14g1841 317 PRINTS Expansin signature 198 211 IPR002963 GO:0009664
Glsi14g1841 317 FunFam Expansin 223 315 - -
Glsi14g1841 317 Pfam Expansin C-terminal domain 224 301 IPR007117 -
Glsi14g1841 317 Gene3D - 223 315 IPR036749 -
Glsi14g1841 317 SUPERFAMILY PHL pollen allergen 220 312 IPR036749 -
Glsi14g1841 317 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 109 223 IPR007112 -
Glsi14g1841 317 SMART dpbb_1 126 213 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1841 Glsi-ChrGlsi14 18647689 18650195 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1841 59 317 Expansin Gene Family AT2G39700 82.625 6.75e-164 455