Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1807 ATGTCTGCAGCTCTGGATATGAGCCTTGATGACATCATTAAGAGCAACAAAAAGCCTGGATCCGGCAACTTCAGGGGTCGTGCCCGAGGATCTGGTCCCGGCCCCACTCGCCCCTTCCCCAATCGCGCCACCATTCGTGCAGCACCTTATACCACCACTAAGGCACCAGAGACGACATGGCCGCGCGATATGTTTACCGATCAGCCTGCGGCAGCATATCCGGCACAAGGTGGTCGGACGTCTTCCATAGAAACAGGAACCAAGCTCTACATATCTAATTTGGATTATGGTGTTTCAAACGATGATATTAAGGAATTGTTTTCTGAAGTTGGTGACCTGAAACGGTATTCAATTCATTTTGACAGGAGTGGAAGGTCAAAGGGTACAGCAGAGGTTGTCTTCTCGCGACGAGCTGATGCAGTTGCTGCTGTGAAGAGATACAACGATGTTCAACTTGATGGTAAACCGATGAAGATAGAGATTATGGGAACAAACATTGCTAGACCCGCTGCAGTTCCTGCTGCGGCTCCAGCTGTGAATGGAGCTATTGGAAATTCAAATGGAGTTCCTAGAAGTGGACAAGGAAGAGGTGGGGCTTTAGGAAGGCTTCGTGGTGGAGGTAGAAGGCAAGGCATTCGAAGGGTTCAAGGACGGGGAAGAGGTCGAGGGGAAAGAGTATCTGCAGAAGATCTTGATGCTGATTTGGAGCAGTATCATGCAGAGGCAATGCAATTAAACTGA 741 0.4926 MSAALDMSLDDIIKSNKKPGSGNFRGRARGSGPGPTRPFPNRATIRAAPYTTTKAPETTWPRDMFTDQPAAAYPAQGGRTSSIETGTKLYISNLDYGVSNDDIKELFSEVGDLKRYSIHFDRSGRSKGTAEVVFSRRADAVAAVKRYNDVQLDGKPMKIEIMGTNIARPAAVPAAAPAVNGAIGNSNGVPRSGQGRGGALGRLRGGGRRQGIRRVQGRGRGRGERVSAEDLDADLEQYHAEAMQLN 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1807 246 SMART FoP_duplication_2 175 246 IPR025715 -
Glsi14g1807 246 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 244 - -
Glsi14g1807 246 Gene3D - 70 228 IPR012677 -
Glsi14g1807 246 CDD RRM_THOC4 87 161 - -
Glsi14g1807 246 FunFam THO complex subunit 4 80 233 - -
Glsi14g1807 246 Coils Coil 228 246 - -
Glsi14g1807 246 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 89 157 IPR000504 GO:0003723
Glsi14g1807 246 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 87 164 IPR000504 GO:0003723
Glsi14g1807 246 MobiDBLite consensus disorder prediction 1 45 - -
Glsi14g1807 246 SUPERFAMILY RNA-binding domain, RBD 69 175 IPR035979 GO:0003676
Glsi14g1807 246 SMART rrm1_1 88 160 IPR000504 GO:0003723
Glsi14g1807 246 MobiDBLite consensus disorder prediction 185 227 - -
Glsi14g1807 246 Pfam C-terminal duplication domain of Friend of PRMT1 190 240 IPR025715 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1807 Glsi-ChrGlsi14 18361099 18365248 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1807 86 161 Eukaryotic Initiation Factors Gene Family AT2G23350 34.211 7.69e-09 53.9