Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1805 ATGTATATTTTGCGTTTAGGGTTGTACTGTAACGAAAAGTTCATTGCCATTCCAAACAACGTAATTCTGATCTCGTTATCTTCTCAGTTGGAGTTTCACTTGATTCATTTGGATGGCGAGATGTTGAGCTGCAGTGTTGGTCTCATCCACAGGGTCCGATTGCTATGCGGACGCGAGTTCTCCACCAAATTGTTCGTAGCAGGTCTTTCTTATGATACTAATGAAACTGTTCTGAGGGATGTTTTTGGACAACATGGTGAAATCATAGAAGTTAAAGTAATATGCGATCGCATGAGTGGAAATTCAAAAGGTTATGGATTTGTGCGGTTCACTTCTGAAGCTGAAGCCGGCAGAGCTCTCGAAGAAATGAACGGCCAGGTGCCTGATATGGATATGAATTCGCGCACATAA 411 0.4234 MYILRLGLYCNEKFIAIPNNVILISLSSQLEFHLIHLDGEMLSCSVGLIHRVRLLCGREFSTKLFVAGLSYDTNETVLRDVFGQHGEIIEVKVICDRMSGNSKGYGFVRFTSEAEAGRALEEMNGQVPDMDMNSRT 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1805 136 SUPERFAMILY RNA-binding domain, RBD 61 127 IPR035979 GO:0003676
Glsi14g1805 136 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 64 127 IPR000504 GO:0003723
Glsi14g1805 136 Gene3D - 57 132 IPR012677 -
Glsi14g1805 136 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 61 127 - -
Glsi14g1805 136 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 62 136 IPR000504 GO:0003723
Glsi14g1805 136 SMART rrm1_1 63 135 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1805 Glsi-ChrGlsi14 18346265 18347779 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1805 62 129 Eukaryotic Initiation Factors Gene Family AT3G16380 42.647 2.32e-11 58.2