Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1799 ATGAAGAGAGGCAGAGATGAAGGAGAGATGGAGAGCGTAGAAATGGTTAATTGTTTGATGTTACTATCCAAAGTTGGAGAAACTGAAACTAATAAACCATCCTCGCTGGAGCGTAGTGGTCGTTGTTTTAGGTGCAAGACTTGCAATAAACAGTTCCCATCTTTTCAAGCCCTTGGAGGCCACAGAGCCAGCCACAAGAAGCCGAAGCTCATGCTTTCCACCTCCCACTTACCTATGAAGCCCAAGATGCACCCTTGCCCCATCTGTGGCATTGAGTTTGGTGTTGGACAGGCGCTGGGAGGCCACATGAGAAAGCATAGAACTCCCAATACCAGAAGGTCTGATTATTTGTGCTTCGACTTGAACTTGACGCCATCGGAAAATTATCTCAACCTCAACTCAATCACACCCGCCCTTAATTGTTTTATTTAA 432 0.4583 MKRGRDEGEMESVEMVNCLMLLSKVGETETNKPSSLERSGRCFRCKTCNKQFPSFQALGGHRASHKKPKLMLSTSHLPMKPKMHPCPICGIEFGVGQALGGHMRKHRTPNTRRSDYLCFDLNLTPSENYLNLNSITPALNCFI 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1799 143 SUPERFAMILY beta-beta-alpha zinc fingers 41 106 IPR036236 -
Glsi14g1799 143 ProSitePatterns Zinc finger C2H2 type domain signature. 86 106 IPR013087 -
Glsi14g1799 143 SMART c2h2final6 84 106 IPR013087 -
Glsi14g1799 143 SMART c2h2final6 43 65 IPR013087 -
Glsi14g1799 143 ProSiteProfiles Zinc finger C2H2 type domain profile. 43 70 IPR013087 -
Glsi14g1799 143 Gene3D Classic Zinc Finger 22 111 - -
Glsi14g1799 143 ProSiteProfiles Zinc finger C2H2 type domain profile. 84 111 IPR013087 -
Glsi14g1799 143 Pfam C2H2-type zinc finger 43 68 - -
Glsi14g1799 143 Pfam C2H2-type zinc finger 84 108 - -
Glsi14g1799 143 PANTHER ZINC FINGER PROTEIN ZAT5 9 125 - -
Glsi14g1799 143 ProSitePatterns Zinc finger C2H2 type domain signature. 45 65 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1799 Glsi-ChrGlsi14 18309795 18310226 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1799 1 128 C2H2 Transcription Factor Family AT2G28710 47.742 3.02e-35 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi14g1799 zf-C2H2_6 6.3e-08 CL0361