LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi14g1794	ATGGCAGCCATCCTCCTTCTTAATTTATCATGTGAACATGTTTTGGTCTGTTCTCCATTTCTTGTTGGTGGTGCCCTGGTCATGGCAGTTATACTTCCATTTATGGAGTTCCAGCTGGTTTATGCTTCCTTGTTATCTTTTTTTTCAGGGTTTCAGGAAGATTTAACAGGTGGAGTCTCCTTTCAGCAACCCATGGCTCCGGCTAAAGTTGATAATTCAAAGAAGACTGACCCAAAGGCACAGGCCTTGAAAACTGCTAAAGCAGTCAAGTCAGGCCCTACCTTCAAGAAGAAGGCCAAGAAAATTCGAACTTCTGTCACATTCCATCGACCAAAGACATTGAAAAAGGATAGGAACCCCAAATACCCTTGTATTAGTGCTCCACCAAGGAATAAGCTTGATCATTATCAAATTCTGAAATATCCTCTCACCACTGAGTCAGCAATGAAGAAGATTGAAGACAATAACACTTTGGTTTTCATTGTTGACTTACGTGCTGACAAGAAGATAAAGGATGCAGTGAAGAAAATGTATGACATTCAAGCCAAGAAAGTAAATACTTTGATCAGGCCCGATTGTACCAAGAAGGCCTATGTCAGGTTGACTCCTGATTATCATACCTTGGATGTCGCGAACAAGATTGGGATTATCTAA	654	0.4098	MAAILLLNLSCEHVLVCSPFLVGGALVMAVILPFMEFQLVYASLLSFFSGFQEDLTGGVSFQQPMAPAKVDNSKKTDPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPCISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDLRADKKIKDAVKKMYDIQAKKVNTLIRPDCTKKAYVRLTPDYHTLDVANKIGII	217

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi14g1794	217	Pfam	Ribosomal protein L23, N-terminal domain	79	128	IPR005633	-
	Glsi14g1794	217	Gene3D	-	99	217	IPR012677	-
	Glsi14g1794	217	FunFam	60S ribosomal protein L23a	97	217	-	-
	Glsi14g1794	217	ProSitePatterns	Ribosomal protein L23 signature.	195	210	IPR001014	GO:0019843
	Glsi14g1794	217	SUPERFAMILY	Ribosomal proteins S24e, L23 and L15e	135	209	IPR012678	GO:0003735\|GO:0005840\|GO:0006412
	Glsi14g1794	217	PANTHER	60S RIBOSOMAL PROTEIN L23A	71	217	IPR013025	GO:0003735\|GO:0005840\|GO:0006412
	Glsi14g1794	217	Hamap	50S ribosomal protein L23 [rplW].	138	217	IPR013025	GO:0003735\|GO:0005840\|GO:0006412
	Glsi14g1794	217	Pfam	Ribosomal protein L23	138	197	IPR013025	GO:0003735\|GO:0005840\|GO:0006412

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi14g1794	Glsi-ChrGlsi14	18245005	18249632	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi14g1794	65	217	Cytoplasmic Ribosomal Protein Gene Family	AT2G39460	85.714	2.93e-64	194

Showing 1 to 1 of 1 entries