Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1768 ATGAGTTGCTTTGGTTGTATAGGGAAATCGAGCAAAAAATCGCAGAGCATCAACTATAGCCAGAGCGAGAAGCCGAACAATCTCCCCGGGGCTGGTACGGTCAAAGTTGATTTGAATGTGAATGGTACGAAGGAACCTAATTCTAAGGATGATCAACTATCTCTGGACGTGAAGAATTTGAATTTAAAAGAGGAGGTTTCGGACGATGGAAAAGTTGATGGTTACCGAGCACAAACATTTACTTTTGATGAACTAGCAGCCGCAACAGGAAATTTTAGGTCAGGTTGCTTTTTGGGAGAAGGAGGGTTTGGCAAGGTTTACAAGGGACACTTGGAGAGAATAAACCAGGTTGTAGCTATAAAGCAGCTTGACCCTAATGGACTTCAAGGAATTCGGGAATTTGTTGTTGAAGTGTTGACACTTAGTCTGGCAGACCACCCTAATCTTGTTAAATTGATTGGGTTTTGTGCTGAGGGAGAGCAGAGGCTATTGGTTTATGAGTACATGCCATTGGGATCTTTGGAGAACCATTTGCATGATCTTCCGCCTGGTAGGAAAGCACTTGGTTGGAACACAAGAATGAAAATAGCAGCTGGTGCTGCTAAGGGTTTGGAATATTTGCATGATAAAATGAAGCCCCCTGTGATATACCGTGACCTTAAATGCTCAAACATTTTATTAGGTGAGGGATATCATCCCAAGTTATCTGATTTTGGCTTGGCAAAAGTAGGCCCAAGCGGTGATAAGACCCATGTTTCAACAAGGGTGATGGGCACATATGGATACTGTGCTCCAGATTATGCAATGACGGGTCAATTGACATTCAAGTCAGATATTTACAGCTTTGGGGTTGTTCTTTTGGAGCTCATCACAGGCAGGAAGGCGATTGATTACTCAAGGTCTGCCAGAGAACAAAATCTGGTTGCTTGGGCAAGGCCCTTATTCAAAGACCGGAGAAGATTCTCACAAATGGTTGACCCATTGCTTGAAGGTCAATATCCTGTGAGAGGTTTGTACCAAGCTCTGGCTATTGCTGCTATGTGTGTTCAAGAGCAGCCTAATATGCGGCCTGTTATAACTGATGTGGTTACAGCATTAAATTACCTTGCTTCCCAGAAATATGATCCCCAAATTCATCCAGTACAAAGCTCCAGAAGAAGGGATGATGATCATAGACATATTGTTGGTAATGGGACTGACACAGATAGATCTGGAGACTAA 1221 0.4308 MSCFGCIGKSSKKSQSINYSQSEKPNNLPGAGTVKVDLNVNGTKEPNSKDDQLSLDVKNLNLKEEVSDDGKVDGYRAQTFTFDELAAATGNFRSGCFLGEGGFGKVYKGHLERINQVVAIKQLDPNGLQGIREFVVEVLTLSLADHPNLVKLIGFCAEGEQRLLVYEYMPLGSLENHLHDLPPGRKALGWNTRMKIAAGAAKGLEYLHDKMKPPVIYRDLKCSNILLGEGYHPKLSDFGLAKVGPSGDKTHVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSFGVVLLELITGRKAIDYSRSAREQNLVAWARPLFKDRRRFSQMVDPLLEGQYPVRGLYQALAIAAMCVQEQPNMRPVITDVVTALNYLASQKYDPQIHPVQSSRRRDDDHRHIVGNGTDTDRSGD 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1768 406 SMART serkin_6 92 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi14g1768 406 MobiDBLite consensus disorder prediction 380 406 - -
Glsi14g1768 406 Gene3D Transferase(Phosphotransferase) domain 1 169 390 - -
Glsi14g1768 406 ProSitePatterns Protein kinases ATP-binding region signature. 98 121 IPR017441 GO:0005524
Glsi14g1768 406 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672|GO:0006468
Glsi14g1768 406 FunFam Serine/threonine-protein kinase PBS1 169 384 - -
Glsi14g1768 406 FunFam probable serine/threonine-protein kinase RLCKVII 64 168 - -
Glsi14g1768 406 MobiDBLite consensus disorder prediction 377 406 - -
Glsi14g1768 406 PANTHER OS07G0668900 PROTEIN 23 378 - -
Glsi14g1768 406 Gene3D Phosphorylase Kinase; domain 1 62 168 - -
Glsi14g1768 406 CDD STKc_IRAK 98 367 - -
Glsi14g1768 406 ProSiteProfiles Protein kinase domain profile. 92 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi14g1768 406 SUPERFAMILY Protein kinase-like (PK-like) 78 384 IPR011009 -
Glsi14g1768 406 Pfam Protein kinase domain 97 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1768 Glsi-ChrGlsi14 18026044 18029992 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1768 1 371 Glycoside Hydrolase AT3G07070 57.143 2.72e-145 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Glsi14g1768 Pkinase 8.7e-43 CL0016