Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1761 ATGTTCGATCTTAATCTGAATGCGGGTTCGGCTCATGACGATGACTCCATCATCTTCTTCGACAAGCTTTCTGAAGGTTCCGGGAATCAAATGGCAGAGTCGGGGATCTCCAATTCCTCTATCGTCAATGCTGACGGGTCCAGCAATGGAGGAGGAGATGACGACTCCTGCTCTACACGGGGCGGGGAATTCTTCACCTTTAATTTCGATATCCTTAAGGACGAAGGCGGGAAAGATGTCACAGCCAAGGAGCTATATCTGGTGAGTGGAGCAAAAGGAGTGGACGGTGAGTCCGAAAATTGGCTGGGTCAGTCTTCTTCAACCCTTCCATCAAGGAAGAGCTGGATGGGTCTCTCGTTCGATCATCAAGGTGGGAAAGGAGAGATGAACATGATTCAGGTTCAGCAACAACCTCAACAGCAAGTGAAGAAGAGCAGAAGGGGTCCAAGGTCTCGGAGCTCGCAGTATAGAGGGGTCACCTTCTACAGGAGGACCGGAAGATGGGAATCGCATATCTGGGATTGCGGGAAACAAGTCTATTTGGGTGGATTTGATACCGCTCATGCCGCTGCTAGAGCCTACGACCGAGCTGCTATTAAGTTTAGGGGAGTTGGTGCGGACATCAATTTCAATGTCAGTGATTACGAGGATGATCTTAAGCAGATGAAAAATCTCACCAAGGAGGAATTCGTGCACATACTGCGTCGCCAAAGTACTGGTTTCTCAAGGGGCAGTTCGAAATACCGAGGAGTAACACTGCACAAATGTGGTCGATGGGAAGCTCGAATGGGACAATTCCTTGGCAAAAAGTATATATATCTTGGGCTATTCGACAGCGAAGTAGAAGCTGCAAGGGCTTACGATAAGGCAGCTATCAAATGCAACGGAAGGGAGGCAGTGACAAACTTTGAGCCAAGAACATATGAAGGGGAGATAAAATCCAAGGCCATTAATGAAGGTGGCAGTCAAAATCTTGATCTCAATTTGGGAATTGCAAGCCCGGGTAGTGATCCTGAAGACAAGAGGGGTCATCTTCAGTTCCAGTCTTTCCCTTACAACATCCATGCCAGAAGAAATTCTAGGGAGACCAAAACTGATTCAATAATTGGTGATCCATCTATGAAAAGGCTGGTTGGAAATGAAGAGCGTCCTTTGAAATGGAACGGCGTATATCCTAGTTTCTTTCTCAATGAGGAAAGGGCAGACAGAATCATCTTAGATCCTTCACAAGGACTCCCCCACTGGCCGTGGCCAACGCATAGTCAGGTTAATGCTACCCCAGTACCACCGTTCTCTACTGCAGCATCATCACGATTCTCAATTTCGGCTACCTGTCCATCGACTACCATCTTTCCAACAAAACCTATGAACTCTATTCCCAACAGTATCTGTTTTACTTCATCCAGCGCAGCTGGCGGTAATGCATCTCAACTTTGTTACCAGATGGAGCCCTCCCAGGCACCGCCCTAG 1470 0.4776 MFDLNLNAGSAHDDDSIIFFDKLSEGSGNQMAESGISNSSIVNADGSSNGGGDDDSCSTRGGEFFTFNFDILKDEGGKDVTAKELYLVSGAKGVDGESENWLGQSSSTLPSRKSWMGLSFDHQGGKGEMNMIQVQQQPQQQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVGADINFNVSDYEDDLKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPRTYEGEIKSKAINEGGSQNLDLNLGIASPGSDPEDKRGHLQFQSFPYNIHARRNSRETKTDSIIGDPSMKRLVGNEERPLKWNGVYPSFFLNEERADRIILDPSQGLPHWPWPTHSQVNATPVPPFSTAASSRFSISATCPSTTIFPTKPMNSIPNSICFTSSSAAGGNASQLCYQMEPSQAPP 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1761 489 SMART rav1_2 155 217 IPR001471 GO:0003700|GO:0006355
Glsi14g1761 489 SMART rav1_2 247 310 IPR001471 GO:0003700|GO:0006355
Glsi14g1761 489 CDD AP2 155 213 IPR001471 GO:0003700|GO:0006355
Glsi14g1761 489 MobiDBLite consensus disorder prediction 136 156 - -
Glsi14g1761 489 SUPERFAMILY DNA-binding domain 154 213 IPR016177 GO:0003677
Glsi14g1761 489 MobiDBLite consensus disorder prediction 30 56 - -
Glsi14g1761 489 Pfam AP2 domain 155 203 IPR001471 GO:0003700|GO:0006355
Glsi14g1761 489 Pfam AP2 domain 246 296 IPR001471 GO:0003700|GO:0006355
Glsi14g1761 489 Gene3D AP2/ERF domain 246 305 IPR036955 GO:0003700|GO:0006355
Glsi14g1761 489 Gene3D AP2/ERF domain 154 213 IPR036955 GO:0003700|GO:0006355
Glsi14g1761 489 PRINTS Ethylene responsive element binding protein signature 248 259 IPR001471 GO:0003700|GO:0006355
Glsi14g1761 489 PRINTS Ethylene responsive element binding protein signature 286 306 IPR001471 GO:0003700|GO:0006355
Glsi14g1761 489 ProSiteProfiles AP2/ERF domain profile. 247 304 IPR001471 GO:0003700|GO:0006355
Glsi14g1761 489 FunFam AP2-like ethylene-responsive transcription factor 154 213 - -
Glsi14g1761 489 SUPERFAMILY DNA-binding domain 246 305 IPR016177 GO:0003677
Glsi14g1761 489 ProSiteProfiles AP2/ERF domain profile. 155 211 IPR001471 GO:0003700|GO:0006355
Glsi14g1761 489 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 128 342 - -
Glsi14g1761 489 FunFam AP2-like ethylene-responsive transcription factor 246 306 - -
Glsi14g1761 489 CDD AP2 246 304 IPR001471 GO:0003700|GO:0006355
Glsi14g1761 489 MobiDBLite consensus disorder prediction 30 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1761 Glsi-ChrGlsi14 17991258 17994924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1761 112 330 AP2-EREBP Transcription Factor Family AT4G36920 73.362 2.28e-97 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Glsi14g1761 AP2 2.9e-09 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi14g1761 14 17991258 17994924 Glsi04g0284 04 1844612 1848623 CCT
Glsi14g1761 14 17991258 17994924 Glsi14g1761 14 17991258 17994924 ECH