Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1741 ATGGACGCAGCGGACGACTTGCAATCCCTGGTATCCGAGCAACGGCGAGAGCTTAAGGCAGCAGAAGCCATGGAGTCCGACTTAGACTTCGCCTTTCATCTTCAGTTGCAAGAGGCTCTCGCGGCTTCTATCGCTTCGCAACCGTCTTCTTCTGTTCAATACGAACCCCGATTCCCAAATGATGACGCCGGTTTGAGGCACATTAACCTTCAGTCTGAGGAGCTTGCCAGGCTGGAGCAAGAAATTAAGGATCGCCAGCAGAGTGAAATTGAAATGCGCAAGATGAAAGAGGATCTTAGCCTCCGGCTGCATGATCGGACGTTTGCCAGAGAGGTTCTCAGAATTCCCGAGGATGATTGGAGAGAATGGGGTGACGATTTCCAGAAGCCCTTTGGCGATGGTTGCTCGAGCTCGAAGCAGGAGACTGTGAGGAGAGACCAAGATGCTGTCTTTAGACTGTACTTCAAAGGCTTGGTAAGTGAGGAGAAGATTAGGGATGAAAAGATTGTTTTGGCGGGGATTGGGGTTGCAATTTGTGATCCAAGAGACAATTTGATATTCGAGGTGAGGAAGCCACTGGTTGGGAATGGAATGAGCAAGACTGCTGCTGAGGCTAAGGCTTTAATCGAAGGTCTTAATGCTGCTATTGCTTTGGACTTGAAGCGCCTAACGTGTTATTGTGATTGCTATCCACTGTACCAATTTGTAAGTAAAAAATGGCCTCCAAAACAGCGGAAGATTGCAATGCTAATTGACCAGGTGACTCTGCTTCGAAGAAAATTTACATACTGCAATACAAAGCTTGTGCCAAGATATGATGTCAAGTTTGCATTTAAGCTCGCAAAAGATGCAATTATTTCTCAGATCACAATTACTGCAGAATCTAGCTGTACAAAGAATCTGAATGAGACTTGTGTCATATGTTTGGAGGATAGCGATGTCAGTCTTATTTTTTCAGTTGATGGCTGTCAACACCGGTATTGCTTTTCTTGCATGAAACAGCATATGGAGGTGAAATTGCTTCATGGAATGTTACCAAAGTGCCCTCATGAAGGATGCAATTCTGAGCTTCTAGTTGACAGCTGCAGGAAATTCTCGACAGATAAATTAATTGAGACCATGCAACAACGAATAAAGGAAGCTTCAATTCCTGTTACTGATAAAATTTATTGCCCTTATCCGAGATGCTCTGCACTAATGTCAAAATTCGAGGTTATAGAGTACTCCAATAGTATTCTTGGCGACTCTGAACAATCAGGACCCAAGAAATGCCAAAAATGTCATGGTCTTTTCTGTATCATCTGTAAGGTCCCTTGGCATAGTGGTATGATATGCTCTGATTACAAAAGGTTAAATCCTAACCCTCCTGCTGAAGATGTGAAACTGAAGTCTCTGGCAACAAGTAGTTTATGGCGGCAGTGTGTGAAGTGCAATCATATGATTGAACTTTCTGAAGGCTGCTATCACATGACTTGCAGATGTGGTTATGAATTTTGCTACAATTGTGGAGCTGAATGGAAGAACAAAGCATCAACATGTTCTTGTCCACTTTGGGACGAGGATAATATTTGGTTGGAGGATCATGAGAGGGAGTTGGAGGAGGCGGAAGAGGAAGAAGAGGAGGAAGATGATTTTTATGACTCTGATTATTCGGAGGGGAATTACTTTTATTGA 1674 0.4367 MDAADDLQSLVSEQRRELKAAEAMESDLDFAFHLQLQEALAASIASQPSSSVQYEPRFPNDDAGLRHINLQSEELARLEQEIKDRQQSEIEMRKMKEDLSLRLHDRTFAREVLRIPEDDWREWGDDFQKPFGDGCSSSKQETVRRDQDAVFRLYFKGLVSEEKIRDEKIVLAGIGVAICDPRDNLIFEVRKPLVGNGMSKTAAEAKALIEGLNAAIALDLKRLTCYCDCYPLYQFVSKKWPPKQRKIAMLIDQVTLLRRKFTYCNTKLVPRYDVKFAFKLAKDAIISQITITAESSCTKNLNETCVICLEDSDVSLIFSVDGCQHRYCFSCMKQHMEVKLLHGMLPKCPHEGCNSELLVDSCRKFSTDKLIETMQQRIKEASIPVTDKIYCPYPRCSALMSKFEVIEYSNSILGDSEQSGPKKCQKCHGLFCIICKVPWHSGMICSDYKRLNPNPPAEDVKLKSLATSSLWRQCVKCNHMIELSEGCYHMTCRCGYEFCYNCGAEWKNKASTCSCPLWDEDNIWLEDHERELEEAEEEEEEEDDFYDSDYSEGNYFY 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1741 557 ProSiteProfiles TRIAD supradomain profile. 301 525 IPR044066 -
Glsi14g1741 557 SUPERFAMILY RING/U-box 303 385 - -
Glsi14g1741 557 Pfam IBR domain, a half RING-finger domain 462 513 IPR002867 GO:0008270
Glsi14g1741 557 Pfam IBR domain, a half RING-finger domain 386 445 IPR002867 GO:0008270
Glsi14g1741 557 Gene3D - 443 552 - -
Glsi14g1741 557 CDD BRcat_RBR_unk 385 448 - -
Glsi14g1741 557 ProSiteProfiles Zinc finger RING-type profile. 305 349 IPR001841 -
Glsi14g1741 557 ProSitePatterns Zinc finger RING-type signature. 323 332 IPR017907 -
Glsi14g1741 557 Coils Coil 525 545 - -
Glsi14g1741 557 MobiDBLite consensus disorder prediction 528 557 - -
Glsi14g1741 557 FunFam RBR-type E3 ubiquitin transferase 443 555 - -
Glsi14g1741 557 Coils Coil 4 24 - -
Glsi14g1741 557 Coils Coil 68 98 - -
Glsi14g1741 557 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 300 385 IPR013083 -
Glsi14g1741 557 Gene3D - 152 292 IPR036397 GO:0003676
Glsi14g1741 557 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 147 525 IPR031127 GO:0004842|GO:0016567
Glsi14g1741 557 MobiDBLite consensus disorder prediction 530 549 - -
Glsi14g1741 557 Pfam Reverse transcriptase-like 170 284 IPR002156 GO:0003676|GO:0004523
Glsi14g1741 557 SUPERFAMILY Ribonuclease H-like 172 287 IPR012337 -
Glsi14g1741 557 CDD Rcat_RBR_unk 471 506 - -
Glsi14g1741 557 FunFam RBR-type E3 ubiquitin transferase 151 288 - -
Glsi14g1741 557 SUPERFAMILY RING/U-box 460 522 - -
Glsi14g1741 557 SMART ibrneu5 372 445 IPR002867 GO:0008270
Glsi14g1741 557 SMART ibrneu5 458 515 IPR002867 GO:0008270
Glsi14g1741 557 FunFam RBR-type E3 ubiquitin transferase 300 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1741 Glsi-ChrGlsi14 17713394 17716037 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1741 115 504 C3H Transcription Factor Family AT2G19610 34.509 1.90e-71 233