Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Glsi14g1739 | ATGGCGAATCGGACGGACGATAACGAACTCCTAACCCTACTTTCTGAGCAAAGCCAAGAGTTCATGATGGCCAAAACCCAAGACTCGGATTTGGACTTGGCGTTTCAACTCCAGATGCAAGAAGCACTTAACGCCTCTCTCGCTTCCCGATCCCCTGCTTCACCATCTTTACCTCCACAAGCCGCCATCTTCACTCAAGAAGAGAAACCTCTGGATTTGGTGGCCACGCTTATGCTGGAGGACGTGCACAGGTTGAAGCTAGAACTGAAGGACCGCGAACAATGTCAAGCGGAGATGACAAAAATGAGGGAAGATCTGGACCGTCGGATTTTCGATCATAATTTCGCCAGAAACATTCTGAATATTCCTGAGGACCAGTGGAAAAAGGACGGTGACAACTACCATATGCCCTACTATGCGGACGGAGCATCGTCTTCGTCGTCGCAGGGCCCTTCTCTCGCTACAGAGTGTTTCAAAGTGTACTGCAAAGGTTTGGTAAGCGAAGAGAGGGTTAGAGATATGAAGGTAAAGGTGGCTGCCTTTGGGGTTGCCATTTGTGATTCTACGGATTGTCTAATTTTTGAAGTTAAGAAGCCTCTTGAAGTGTCGGAAACTGGTGGGGTCTTGCTGAGCACTGAATTTGCTGAGCTGCATGCTGTGGTTGAAGGCCTTGATAGCGCTCTTAGCTTGGGATTACAAAGGGTTACCTTTTTCTGCGATGACTATATGCTTTACCAATATGTCACAGGCAGAGTGCCAGCAAGCCAAAGTAAATTCGCTGGGCTAGTCAATCAGGTGTCTCATCTTCAAAAAAAGTTTGTATATTGTGTGCCGTCTTTGGTTGCACGGAATGATATCAAATATGCTTTTAAATCTGCAAGAGACGCAATAGTTTCTCAAATCACATGGTCTGCCGAAAATGATAAAGGCACAAGCATTAAGGAGACCTGTGCAATTTGTTTTGAAGATACCAGTGTTGATAAAATGTTTACAGTGGACCATTGCTTGCATAGATATTGTTTTGCATGTATGAAACAGCATGTGGAGGTGAAGCTGCTAAATGGGATGATGGCAGAGTGCCCTCATGAAGGTTGTAAATCTGAGGTGAAAGTTGATAGCTACAGTAAACTTTTGGCGCCAGAGTTGGTTGAAGTCCTCAGCCAACGCATTAAAGAATCAGCTATTCCTGTTATAGAGAAAGTGTATTGCCCATTCCCTAGGTGTTCAGCATTAATGTCAAAGCACGAGGTCTTACAGTACACTAAAACTACATATGTTGGAGCTGAACTATCTGGAGCCAGGAAATGCATGAAATGTCATCGGTTTTTCTGTATCAATTGCAGGGTTTCTTGGCATTACAATAAGAACTGCAGTGACTATAAAAATTCAAATCTTTATCTTAATGCAGAAGATGCTAAGCTGAAGTCTCTTGCTACCACCAAACTCTGGAGGCAGTGTGTCAAGTGCAATCACGTAATTGAACTAGCTGAAGATGTGGGTATGAATTTTGCTACACATGTGGAGCACAGTGGAAGAACAAGAGAGCAACATGCTCTTGTCCAATCTGGGATGAGACTAACATTATACGTGATGGACAATTTTCAGACAGATGTGACAATTATGGGTGCGTTCTATTTGATACGGAAGTATTTTCAGCTGCTTGGTCGGACCATTGCAAAGACATTAGGTGAAATGGCAAATGTAGGTGTGATTGTAGGAAAACGATTAGTGCTTGGAAGAAGATCTACTGGTAAATTTGATGCACAAGGAGTTTATGTTGTTTCTGTTTTGCAAATCTGCATAGGATAA | 1809 | 0.4334 | MANRTDDNELLTLLSEQSQEFMMAKTQDSDLDLAFQLQMQEALNASLASRSPASPSLPPQAAIFTQEEKPLDLVATLMLEDVHRLKLELKDREQCQAEMTKMREDLDRRIFDHNFARNILNIPEDQWKKDGDNYHMPYYADGASSSSSQGPSLATECFKVYCKGLVSEERVRDMKVKVAAFGVAICDSTDCLIFEVKKPLEVSETGGVLLSTEFAELHAVVEGLDSALSLGLQRVTFFCDDYMLYQYVTGRVPASQSKFAGLVNQVSHLQKKFVYCVPSLVARNDIKYAFKSARDAIVSQITWSAENDKGTSIKETCAICFEDTSVDKMFTVDHCLHRYCFACMKQHVEVKLLNGMMAECPHEGCKSEVKVDSYSKLLAPELVEVLSQRIKESAIPVIEKVYCPFPRCSALMSKHEVLQYTKTTYVGAELSGARKCMKCHRFFCINCRVSWHYNKNCSDYKNSNLYLNAEDAKLKSLATTKLWRQCVKCNHVIELAEDVGMNFATHVEHSGRTREQHALVQSGMRLTLYVMDNFQTDVTIMGAFYLIRKYFQLLGRTIAKTLGEMANVGVIVGKRLVLGRRSTGKFDAQGVYVVSVLQICIG | 602 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Glsi14g1739 | 602 | Pfam | IBR domain, a half RING-finger domain | 400 | 457 | IPR002867 | GO:0008270 | |
Glsi14g1739 | 602 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 220 | 497 | IPR031127 | GO:0004842|GO:0016567 | |
Glsi14g1739 | 602 | ProSitePatterns | Zinc finger RING-type signature. | 335 | 344 | IPR017907 | - | |
Glsi14g1739 | 602 | Gene3D | - | 138 | 297 | IPR036397 | GO:0003676 | |
Glsi14g1739 | 602 | ProSiteProfiles | TRIAD supradomain profile. | 313 | 549 | IPR044066 | - | |
Glsi14g1739 | 602 | FunFam | RBR-type E3 ubiquitin transferase | 312 | 397 | - | - | |
Glsi14g1739 | 602 | SUPERFAMILY | RING/U-box | 316 | 397 | - | - | |
Glsi14g1739 | 602 | SMART | ibrneu5 | 384 | 457 | IPR002867 | GO:0008270 | |
Glsi14g1739 | 602 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 310 | 394 | IPR013083 | - | |
Glsi14g1739 | 602 | Pfam | Reverse transcriptase-like | 177 | 295 | IPR002156 | GO:0003676|GO:0004523 | |
Glsi14g1739 | 602 | CDD | BRcat_RBR_unk | 399 | 460 | - | - | |
Glsi14g1739 | 602 | FunFam | RBR-type E3 ubiquitin transferase | 158 | 300 | - | - | |
Glsi14g1739 | 602 | ProSiteProfiles | Zinc finger RING-type profile. | 317 | 361 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Glsi14g1739 | Glsi-ChrGlsi14 | 17701624 | 17704775 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Glsi14g1739 | 122 | 509 | C3H Transcription Factor Family | AT2G19610 | 34.271 | 8.44e-71 | 233 |