Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1739 ATGGCGAATCGGACGGACGATAACGAACTCCTAACCCTACTTTCTGAGCAAAGCCAAGAGTTCATGATGGCCAAAACCCAAGACTCGGATTTGGACTTGGCGTTTCAACTCCAGATGCAAGAAGCACTTAACGCCTCTCTCGCTTCCCGATCCCCTGCTTCACCATCTTTACCTCCACAAGCCGCCATCTTCACTCAAGAAGAGAAACCTCTGGATTTGGTGGCCACGCTTATGCTGGAGGACGTGCACAGGTTGAAGCTAGAACTGAAGGACCGCGAACAATGTCAAGCGGAGATGACAAAAATGAGGGAAGATCTGGACCGTCGGATTTTCGATCATAATTTCGCCAGAAACATTCTGAATATTCCTGAGGACCAGTGGAAAAAGGACGGTGACAACTACCATATGCCCTACTATGCGGACGGAGCATCGTCTTCGTCGTCGCAGGGCCCTTCTCTCGCTACAGAGTGTTTCAAAGTGTACTGCAAAGGTTTGGTAAGCGAAGAGAGGGTTAGAGATATGAAGGTAAAGGTGGCTGCCTTTGGGGTTGCCATTTGTGATTCTACGGATTGTCTAATTTTTGAAGTTAAGAAGCCTCTTGAAGTGTCGGAAACTGGTGGGGTCTTGCTGAGCACTGAATTTGCTGAGCTGCATGCTGTGGTTGAAGGCCTTGATAGCGCTCTTAGCTTGGGATTACAAAGGGTTACCTTTTTCTGCGATGACTATATGCTTTACCAATATGTCACAGGCAGAGTGCCAGCAAGCCAAAGTAAATTCGCTGGGCTAGTCAATCAGGTGTCTCATCTTCAAAAAAAGTTTGTATATTGTGTGCCGTCTTTGGTTGCACGGAATGATATCAAATATGCTTTTAAATCTGCAAGAGACGCAATAGTTTCTCAAATCACATGGTCTGCCGAAAATGATAAAGGCACAAGCATTAAGGAGACCTGTGCAATTTGTTTTGAAGATACCAGTGTTGATAAAATGTTTACAGTGGACCATTGCTTGCATAGATATTGTTTTGCATGTATGAAACAGCATGTGGAGGTGAAGCTGCTAAATGGGATGATGGCAGAGTGCCCTCATGAAGGTTGTAAATCTGAGGTGAAAGTTGATAGCTACAGTAAACTTTTGGCGCCAGAGTTGGTTGAAGTCCTCAGCCAACGCATTAAAGAATCAGCTATTCCTGTTATAGAGAAAGTGTATTGCCCATTCCCTAGGTGTTCAGCATTAATGTCAAAGCACGAGGTCTTACAGTACACTAAAACTACATATGTTGGAGCTGAACTATCTGGAGCCAGGAAATGCATGAAATGTCATCGGTTTTTCTGTATCAATTGCAGGGTTTCTTGGCATTACAATAAGAACTGCAGTGACTATAAAAATTCAAATCTTTATCTTAATGCAGAAGATGCTAAGCTGAAGTCTCTTGCTACCACCAAACTCTGGAGGCAGTGTGTCAAGTGCAATCACGTAATTGAACTAGCTGAAGATGTGGGTATGAATTTTGCTACACATGTGGAGCACAGTGGAAGAACAAGAGAGCAACATGCTCTTGTCCAATCTGGGATGAGACTAACATTATACGTGATGGACAATTTTCAGACAGATGTGACAATTATGGGTGCGTTCTATTTGATACGGAAGTATTTTCAGCTGCTTGGTCGGACCATTGCAAAGACATTAGGTGAAATGGCAAATGTAGGTGTGATTGTAGGAAAACGATTAGTGCTTGGAAGAAGATCTACTGGTAAATTTGATGCACAAGGAGTTTATGTTGTTTCTGTTTTGCAAATCTGCATAGGATAA 1809 0.4334 MANRTDDNELLTLLSEQSQEFMMAKTQDSDLDLAFQLQMQEALNASLASRSPASPSLPPQAAIFTQEEKPLDLVATLMLEDVHRLKLELKDREQCQAEMTKMREDLDRRIFDHNFARNILNIPEDQWKKDGDNYHMPYYADGASSSSSQGPSLATECFKVYCKGLVSEERVRDMKVKVAAFGVAICDSTDCLIFEVKKPLEVSETGGVLLSTEFAELHAVVEGLDSALSLGLQRVTFFCDDYMLYQYVTGRVPASQSKFAGLVNQVSHLQKKFVYCVPSLVARNDIKYAFKSARDAIVSQITWSAENDKGTSIKETCAICFEDTSVDKMFTVDHCLHRYCFACMKQHVEVKLLNGMMAECPHEGCKSEVKVDSYSKLLAPELVEVLSQRIKESAIPVIEKVYCPFPRCSALMSKHEVLQYTKTTYVGAELSGARKCMKCHRFFCINCRVSWHYNKNCSDYKNSNLYLNAEDAKLKSLATTKLWRQCVKCNHVIELAEDVGMNFATHVEHSGRTREQHALVQSGMRLTLYVMDNFQTDVTIMGAFYLIRKYFQLLGRTIAKTLGEMANVGVIVGKRLVLGRRSTGKFDAQGVYVVSVLQICIG 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1739 602 Pfam IBR domain, a half RING-finger domain 400 457 IPR002867 GO:0008270
Glsi14g1739 602 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 220 497 IPR031127 GO:0004842|GO:0016567
Glsi14g1739 602 ProSitePatterns Zinc finger RING-type signature. 335 344 IPR017907 -
Glsi14g1739 602 Gene3D - 138 297 IPR036397 GO:0003676
Glsi14g1739 602 ProSiteProfiles TRIAD supradomain profile. 313 549 IPR044066 -
Glsi14g1739 602 FunFam RBR-type E3 ubiquitin transferase 312 397 - -
Glsi14g1739 602 SUPERFAMILY RING/U-box 316 397 - -
Glsi14g1739 602 SMART ibrneu5 384 457 IPR002867 GO:0008270
Glsi14g1739 602 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 310 394 IPR013083 -
Glsi14g1739 602 Pfam Reverse transcriptase-like 177 295 IPR002156 GO:0003676|GO:0004523
Glsi14g1739 602 CDD BRcat_RBR_unk 399 460 - -
Glsi14g1739 602 FunFam RBR-type E3 ubiquitin transferase 158 300 - -
Glsi14g1739 602 ProSiteProfiles Zinc finger RING-type profile. 317 361 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1739 Glsi-ChrGlsi14 17701624 17704775 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1739 122 509 C3H Transcription Factor Family AT2G19610 34.271 8.44e-71 233