Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1737 ATGGCGAATCGGACGGACGATAACGAACTCCTAACCCTACTTTCTGAGCAAAGCCAAGAGTTCATGATGGCCAAAACCCAAGACTCGGATTTGGACTTGGCGTTTCAACTCCAGATGCAAGAAGCACTTAACGCCTCTCTCGCTTCCCGATCCCCTGCTTCACCATCTTTACCTCCACAAGCCGCCATCTTCACTCAAGAAGAGAAACCTCTGGATTTGGTGGCCACGCTTATGCTGGAGGACGTGCACAGGTTGAAGCTAGAACTGAAGGACCGCGAACAATGTCAAGCGGAGATGACAAAAATGAGGGAAGATCTGGACCGTCGGATTTTCGATCATAATTTCGCCAGAAACATTCTGAATATTCCTGAGGACCAGTGGAAAAAGGACGGTGACAACTACCATATGCCCTACTATGCGGACGGAGCATCGTCTTCGTCGTCGCGGGGCCCTTCTCTCGCTACAGAGTGTTTCAAAGTGTACTGCAAAGTTAAGAAGCCTCTTGAAGTGTCGGAAACTGGTGAGGTCTTGCTGAGCACTGAATTTGCTGAGCTGCATGCTGTGGTTGAAGGCCTTGATAGCGCTCTTAGCTTGGGATTACAAAGGGTTACCTTTTTCTGCGATGACTATATGCTTTACCAATATGTCACAGGCAGAGTGCCAGCAAGCCAAAGTAAATTCGCTGGGCTAGTCAATCAGGTGTCTCATCTTCAAAAAAAGTTTGTATATTGTGTGCCGTCTTTGGTTGCACGGAATGATATCAAATATGCTTTTAAATCTGCAAGAGACGCAATAGTTTCTCAAATCACGTGGTCTGCCGAAAATGATAAAGGCACAAGCATTAAGGAGACCTGTGCAATCTGTTTTGAAGATACCAGTGTTGATAAAATGTTTACAGTGGACCATTGCTTGCATAGATATTGTTTTGCATGTATGAAACAGCATGTGGAGGTGAAGCTGCTAAATGGGATGATGGCAGAGTGCCCTCATGAAGGTTGTAAATCTGAGGTGAAAGTTGATAGCTGCAGTAAACTTTTGGCGCCAGAGTTGGTTGAAGTCCTCAGCCAACGCATTAAAGAATCAGCTATTCCTGTTATAGAGAAAGTGTATTGCCCATTCCCTAGGTGTTCAGCATTAATGTCAAAGCACGAGGTCTTACAGTACACTAAAACTACATATGTTGGAGCTGAACTATCTGGAGCCAGGAAATGCATGAAATGTCATCGGTTTTTCTGTATCAATTGCAGGGTTTCTTGGCATTACAATAAGAACTGCAGTGACTATAAAAATTCAAATCTTTATCTTAATGCAGAAGATGCTAAGCTGAAGTCTCTTGCTACCACCAAACTCTGGAGGCAGTGTGTCAAGTGCAATCACGTAATTGAACTAGCTGAAGGTTGCTATCATATTACCTGCAGATGTGGGTATGAATTTTGCTACACATGTGGAGCACAGTGGAAGAACAAGAGAGCAACATGCTCTTGTCCAATCTGGGATGAGACTAACATTATACGTGATGGACATGTGACAATTATGGGTGCGTTCTATTTGATACGGAAGTATTTTCAGCTGCTTGGTCGGACCATTGCAAAGACATTAGGTGAAATGGCAAATGTAGGTGTGATTGTAGGAAAACGATTAGTGCTTGGAAGATGTGGTTATGAATTTTGCTACAATTGTGGAGCTGAATGGAAGAACAAAGCATCAACATGTTCTTGTCCCCTGGATAATATTTAG 1737 0.437 MANRTDDNELLTLLSEQSQEFMMAKTQDSDLDLAFQLQMQEALNASLASRSPASPSLPPQAAIFTQEEKPLDLVATLMLEDVHRLKLELKDREQCQAEMTKMREDLDRRIFDHNFARNILNIPEDQWKKDGDNYHMPYYADGASSSSSRGPSLATECFKVYCKVKKPLEVSETGEVLLSTEFAELHAVVEGLDSALSLGLQRVTFFCDDYMLYQYVTGRVPASQSKFAGLVNQVSHLQKKFVYCVPSLVARNDIKYAFKSARDAIVSQITWSAENDKGTSIKETCAICFEDTSVDKMFTVDHCLHRYCFACMKQHVEVKLLNGMMAECPHEGCKSEVKVDSCSKLLAPELVEVLSQRIKESAIPVIEKVYCPFPRCSALMSKHEVLQYTKTTYVGAELSGARKCMKCHRFFCINCRVSWHYNKNCSDYKNSNLYLNAEDAKLKSLATTKLWRQCVKCNHVIELAEGCYHITCRCGYEFCYTCGAQWKNKRATCSCPIWDETNIIRDGHVTIMGAFYLIRKYFQLLGRTIAKTLGEMANVGVIVGKRLVLGRCGYEFCYNCGAEWKNKASTCSCPLDNI 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1737 578 ProSitePatterns Zinc finger RING-type signature. 303 312 IPR017907 -
Glsi14g1737 578 Pfam IBR domain, a half RING-finger domain 368 425 IPR002867 GO:0008270
Glsi14g1737 578 Pfam IBR domain, a half RING-finger domain 440 493 IPR002867 GO:0008270
Glsi14g1737 578 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 362 IPR013083 -
Glsi14g1737 578 FunFam RBR-type E3 ubiquitin transferase 423 512 - -
Glsi14g1737 578 ProSiteProfiles TRIAD supradomain profile. 281 499 IPR044066 -
Glsi14g1737 578 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 182 497 IPR031127 GO:0004842|GO:0016567
Glsi14g1737 578 CDD Rcat_RBR_unk 451 486 - -
Glsi14g1737 578 Gene3D - 136 271 IPR036397 GO:0003676
Glsi14g1737 578 SMART ibrneu5 352 425 IPR002867 GO:0008270
Glsi14g1737 578 SMART ibrneu5 438 495 IPR002867 GO:0008270
Glsi14g1737 578 SUPERFAMILY RING/U-box 440 502 - -
Glsi14g1737 578 Pfam Reverse transcriptase-like 179 263 IPR002156 GO:0003676|GO:0004523
Glsi14g1737 578 FunFam RBR-type E3 ubiquitin transferase 280 365 - -
Glsi14g1737 578 SUPERFAMILY RING/U-box 284 365 - -
Glsi14g1737 578 CDD BRcat_RBR_unk 367 428 - -
Glsi14g1737 578 ProSiteProfiles Zinc finger RING-type profile. 285 329 IPR001841 -
Glsi14g1737 578 SMART ring_2 285 331 IPR001841 -
Glsi14g1737 578 SMART ring_2 495 576 IPR001841 -
Glsi14g1737 578 Gene3D - 424 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1737 Glsi-ChrGlsi14 17671337 17675193 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1737 181 484 C3H Transcription Factor Family AT2G19610 39.088 1.58e-70 231