Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1736 ATGGCGAATCGTACGGACGATTACGAACTCCAAACCCTACTTTCTGAGCAAAGCCAAGAGTTCATGATGACCAAAACCCAAGACTCGGATTTGGACTTGGCGTTTCAACTCCAAATGCAAGAAGCGCTTAATGCCTCTCTCGCTTCCCGATCCCCTGCTTCACCGTCTTTACCGCCACAAGCCGCCATCTTCACTCAAGAAGAGAAGCCTCTGGATTTGGTGGCCACGCTTATGCTGGAGGACGTGCACAGGTTGAAACTAGAGCTGAATGACCGCGAACAATGTCAAGCGGAGATGACAAAAATGAGGGAAGATCTGGACCGTCGGGTTTTCGATCATAATTTCGCCAGAAACATTCTGAATATCCCTGAGGACCAGTGGAAAAAGGACGGTGACAACTACCATATGCCCTACTATGCGGACGGAGCATCGTCTTCGTCGTCGCGGGGCCCTTCTCTCGCTACAGAGTGTTTCAAAGTGTACTGCAAAGGTTTGGTAAGCGAAGAGAGGGTTAGAGATATGAAGGTAAAGGTGGCTGCCTTTGGGGTTGCCATTTGTGATTCTACGGATTATCTAATTTTTGAAGTTAAGAAGCCTCTTGAAGTGTCGGAAACTGGTGGCGTCTTGCTGAGCACTGAATTTGCTGAGCTGCATGCTGTGGTTGAAGGCCTTGATAGCGCTCTTAGCTTGGGATTACAAAGGGTTACCTTTTTCTGCGATGACTATATGCTTTACCAATATGTTACAGGCAGAATGCCAGCAAGCCTAAGTAAATTCGCTGGGCTAGTCAATCAGGTGTCTCATCTTCAAAAAAAGTTTGTATATTGTGTGCCGTCTTTGGTTGCACGGAATGATATCAAATATGCTTTTAAATCTGCAAGAGACGCAATAGTTTCTCAAATCACATGGTCTGCCGAAAATGGTAAAGGCACAAGCATTAAGGAGACCTGTGCAATTTGTTTTGAAGATACCAGTGTTGATAAAATGTTTACAGTGGACCACTGCTTGCATAGATATTGTTTTGCATGTATGAAACAGCATGTGGAGGTGAAGCTGCTAAATGGGATGATGGCAGAGTGCCCTCATGAAGGTTGTAAATCTGAGGTGACTGTTGATAGCTGCAGTAAACTTTTGGCGCCAGAATTGGTTGAGGTCCTCAGCCAACGCATTAAAGAATCAGCTATTCCTGTTATAGAGAAAGTGTATTGCCCATTCCCTAGGTGTTCAGCATTAATGTCAAAGCACGAGGTCTTACAGTACACTAAAACTACATATGTTGGAGCTGAACTATCTGGAGCCAGGAAATGCATGAAATGTCGTCGGTTTTTCTGTATCAATTGCAGGGTTGCTTGGCATTACAATAAGACCTGCAATGACTATAAAAATTCAAATCTTTATCTTAATGCAGAAGATGCTAAGCTGAAGTCTCTTGTTACCACCAAACTCTGGAGGCAGTGTGTCAAGTGCAATCACGTAATTGAACTAGCTGAAGATGTGGGTATGAATTTTGCTACACATGTGGAGCACAGTGGAAGAACAAGAGAGCAACATGCACTTGTCCAATCTGGGATGAGACTAACATTATACGTGATGGACGTGGAAGACAAAGACAATGATTACAGATAG 1626 0.4422 MANRTDDYELQTLLSEQSQEFMMTKTQDSDLDLAFQLQMQEALNASLASRSPASPSLPPQAAIFTQEEKPLDLVATLMLEDVHRLKLELNDREQCQAEMTKMREDLDRRVFDHNFARNILNIPEDQWKKDGDNYHMPYYADGASSSSSRGPSLATECFKVYCKGLVSEERVRDMKVKVAAFGVAICDSTDYLIFEVKKPLEVSETGGVLLSTEFAELHAVVEGLDSALSLGLQRVTFFCDDYMLYQYVTGRMPASLSKFAGLVNQVSHLQKKFVYCVPSLVARNDIKYAFKSARDAIVSQITWSAENGKGTSIKETCAICFEDTSVDKMFTVDHCLHRYCFACMKQHVEVKLLNGMMAECPHEGCKSEVTVDSCSKLLAPELVEVLSQRIKESAIPVIEKVYCPFPRCSALMSKHEVLQYTKTTYVGAELSGARKCMKCRRFFCINCRVAWHYNKTCNDYKNSNLYLNAEDAKLKSLVTTKLWRQCVKCNHVIELAEDVGMNFATHVEHSGRTREQHALVQSGMRLTLYVMDVEDKDNDYR 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1736 541 Coils Coil 85 105 - -
Glsi14g1736 541 Pfam Reverse transcriptase-like 177 295 IPR002156 GO:0003676|GO:0004523
Glsi14g1736 541 Coils Coil 530 541 - -
Glsi14g1736 541 ProSitePatterns Zinc finger RING-type signature. 335 344 IPR017907 -
Glsi14g1736 541 ProSiteProfiles TRIAD supradomain profile. 313 541 IPR044066 -
Glsi14g1736 541 SMART ibrneu5 384 457 IPR002867 GO:0008270
Glsi14g1736 541 SUPERFAMILY RING/U-box 316 397 - -
Glsi14g1736 541 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 310 394 IPR013083 -
Glsi14g1736 541 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 157 497 IPR031127 GO:0004842|GO:0016567
Glsi14g1736 541 FunFam RBR-type E3 ubiquitin transferase 158 300 - -
Glsi14g1736 541 FunFam RBR-type E3 ubiquitin transferase 312 397 - -
Glsi14g1736 541 CDD BRcat_RBR_unk 399 460 - -
Glsi14g1736 541 Pfam IBR domain, a half RING-finger domain 400 457 IPR002867 GO:0008270
Glsi14g1736 541 Gene3D - 138 297 IPR036397 GO:0003676
Glsi14g1736 541 ProSiteProfiles Zinc finger RING-type profile. 317 361 IPR001841 -
Glsi14g1736 541 Pfam Zinc finger, C3HC4 type (RING finger) 317 361 IPR018957 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1736 Glsi-ChrGlsi14 17637846 17640422 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1736 151 509 C3H Transcription Factor Family AT2G19610 36.288 2.00e-75 243