Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1728 ATGGAAATTGATCTGAACCATGCACTGACTGAGGTTGAGAAAGGTGCTTCTGTTTGTTGTTTCTCTTCTTCGACTTGTTCGTCTTCTCCTCATGTATCTTCTTCTTATTTGGAACTTTGGCATGCTTGTGCTGGCCCCCTCACCTCCCTGCCTAAGAAAGGAAATGTAGTGGTCTACTTTCCTCAAGGTCACCTAGAGCAGGTTGCCTCTTTCTCTCCTTTCTCACCCATGGAGATGCCCAGCTATGATCTTCAACCACAAATCTTTTGCAGGGTTGTCAATATCCAGCTACTTGCCAATAAGGAGAATGACGAGGTTTACACACAGCTTACTTTGCTTCCCCAGGCAGAGTTAGCAGGGATGCATTTGGAGGGCCAAGAGCTTGGGGAATTGGGAGCATATGAGGAGGAAAATGGAGCACCTATAAAATCAACTCCTCACATGTTCTGCAAGACGCTTACTGCATCTGATACCAGCACTCACGGGGGGTTCTCTGTTCCTCGCAGAGCTGCTGAAGACTGTTTTCCTCCTTTGGATTATAAGCAGCAGAGACCCTCTCAAGAGCTTGTTGCCAAAGACCTGCATGGAGTAGAGTGGAAATTTCGTCATATTTACAGAGGTCAGCCAAGGCGTCATCTACTCACAACTGGCTGGAGTATTTTTGTTAGCCAAAAGAATCTTGTTTCTGGTGATGCGGTGCTCTTCCTAAGGGGTGAAAGTGGAGAATTGAGACTGGGAATCAGAAGAGCTGTTCGACCTAAAAATGGTCTTCCTGAATCAATTATTGGCAATCAGAATTGTTATCCCAATTTCCTGTCTTCAGTGGCTAATGCTATATCCACCAAAAGCGTATTTCATGTTTTCTACAGTCCGAGAGCAAGTCATGCAGAGTTTGTGGTGCCCTACCAAAAATATGTCAAAAGTATCAAGAATCCAATGACAATTGGGACAAGGTTCAAAATGAAATTTGAAATGGACGAATCTCCAGAAAGAAGGTGTAGTGGTGGTATAGTGACTGGAATGCGTGATTTGGATCCCTATAGATGGCCTAAATCAAAATGGAGGTGCTTGATGGTCAGATGGGATGAGGATATTGCTACTAATCATCAAGAACGAGTTTCTCCATGGGAGATCGAGCCTTGTGTTTCTCTGCCTCCCTTGAGCATTCAGTCATCCCCAAGACTAAAGAAATTGCGGACAGGTCTGCAAGCTGCCGCACCTAGTCACCTCATCACTGGAGGCAGTGGATTTATGGACTTTGAGGAGTCTGTAATATCACCCAAGGTCTTGCAAGGTCAAGAAAATACAGGTTTTGTGTCACACTATTATGGATGTGATGCAGTAACCAAACAGCCAGATTTTGAGATGAGTCATCCAAATCTTGCATCAACTGGAGTAAGAAAGGCTGCTGCTGCTGCTGAGCTTATGAGGGTTCACCCTTCTAGTTACGCAGGCTTTGTGGAAACTAACAAGTTTCTGAGGGTCTTGCAAGGTCAAGAAATATGTTCATTGAGATCCCTGAAAGGAAAGGCTGATTTCAACCTTGGTGCTTGGGGTAAACCCAGTGTCAGTTGCACAACTTTCAACCTACATCAGGCATCCAAACCCAACTTTCACCCTTTAGGACCACAGGTCCTTCAAACTGCATATTTTCCTTGTGGGGACATTCACAAGGTTGGTCAAGGTAACATGTTGGGCTCTAAACCTTCTACTCAGGCGGAGATCATAACGAATGAAATTGGAGGGTCAGATCTTCCAGATGAGAAGCTAGGAGCAAGTATAGGGATTCCAAATGATGACAATTTCAAGGGGAAGGTAAATGCTTGTAAACTATTTGGGTTTCCCTTGTCTGGAGAAGCTGACTCTCAGAATTTACAGAACCCTGCTAAAAGGAGTTGCACAAAGGTTCACAAGCAAGGTAGCTTAGTTGGAAGAGCCATTGATCTCTCGAGATTGAGCAGCTACAGTGACCTGTTGAGTGAACTAGAGCGACTATTTGGCATGGAAGGCCTTATAAGAGATCCTGATAAAGGATGGAGGATCCTATACACGGACAGCGAGAATGACATAATGGTTGTGGGGGATGACCCATGGCATGAGTTCTGCAATGTCGTATCCAAGATCCATATATATACCCAAGAAGAAGTGGAGAAGATGACAATTGGGATGATAAGTGATGATACCCAGAGCTGTTTGGAACAGGCACCAGTCGTAATGGAGGCTTCGAAGTCTTCATCAGTGGGCCAGCCAGACTCTTCTCCTACACTTGTGTCTAATTTTCAGGGTTGTCCTGAGTATATGTTAATGCTATGA 2313 0.447 MEIDLNHALTEVEKGASVCCFSSSTCSSSPHVSSSYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQVASFSPFSPMEMPSYDLQPQIFCRVVNIQLLANKENDEVYTQLTLLPQAELAGMHLEGQELGELGAYEEENGAPIKSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGESGELRLGIRRAVRPKNGLPESIIGNQNCYPNFLSSVANAISTKSVFHVFYSPRASHAEFVVPYQKYVKSIKNPMTIGTRFKMKFEMDESPERRCSGGIVTGMRDLDPYRWPKSKWRCLMVRWDEDIATNHQERVSPWEIEPCVSLPPLSIQSSPRLKKLRTGLQAAAPSHLITGGSGFMDFEESVISPKVLQGQENTGFVSHYYGCDAVTKQPDFEMSHPNLASTGVRKAAAAAELMRVHPSSYAGFVETNKFLRVLQGQEICSLRSLKGKADFNLGAWGKPSVSCTTFNLHQASKPNFHPLGPQVLQTAYFPCGDIHKVGQGNMLGSKPSTQAEIITNEIGGSDLPDEKLGASIGIPNDDNFKGKVNACKLFGFPLSGEADSQNLQNPAKRSCTKVHKQGSLVGRAIDLSRLSSYSDLLSELERLFGMEGLIRDPDKGWRILYTDSENDIMVVGDDPWHEFCNVVSKIHIYTQEEVEKMTIGMISDDTQSCLEQAPVVMEASKSSSVGQPDSSPTLVSNFQGCPEYMLML 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1728 770 CDD B3_DNA 147 249 IPR003340 GO:0003677
Glsi14g1728 770 ProSiteProfiles B3 DNA-binding domain profile. 149 251 IPR003340 GO:0003677
Glsi14g1728 770 Gene3D - 313 385 - -
Glsi14g1728 770 FunFam Auxin response factor 147 251 - -
Glsi14g1728 770 FunFam Auxin response factor 626 720 - -
Glsi14g1728 770 SUPERFAMILY DNA-binding pseudobarrel domain 141 258 IPR015300 -
Glsi14g1728 770 Gene3D - 627 720 - -
Glsi14g1728 770 Pfam Auxin response factor 275 357 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Glsi14g1728 770 Pfam AUX/IAA family 626 715 IPR033389 -
Glsi14g1728 770 Gene3D - 147 251 IPR015300 -
Glsi14g1728 770 SUPERFAMILY CAD & PB1 domains 634 710 - -
Glsi14g1728 770 FunFam Auxin response factor 312 385 - -
Glsi14g1728 770 ProSiteProfiles PB1 domain profile. 631 715 IPR000270 GO:0005515
Glsi14g1728 770 SMART B3_2 149 251 IPR003340 GO:0003677
Glsi14g1728 770 Pfam B3 DNA binding domain 149 250 IPR003340 GO:0003677
Glsi14g1728 770 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 35 720 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1728 Glsi-ChrGlsi14 17568256 17573153 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1728 32 757 B3 DNA Binding Superfamily AT5G60450 61.917 0.0 862
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Glsi14g1728 AUX_IAA 9.9e-07 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi14g1728 14 17568256 17573153 Glsi14g1728 14 17568256 17573153 ECH