Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1712 ATGAGTACTTGGGAAAAGGTTGTGAGTGGGGATCATGATGCATCTTCCTGCAAAAGAACAGTTTCTCTTCCAGTTCAGAAGGTGGATGATCCAATGGGAACAACTAAAGAATCAATACCTGCTCGTCATTGGAAGAGACAGAATCTTCTCCTAGAAATACCCTCAAGAACATCAGAAGAGCATTATCAGGATTTTGTTGGAATTAAGATGCCACTGACACCAAGTCCCACTCCCACTCCCAAGAGAGTAAATTTTCTCGTGACCTCTCGATCTGTTGATGTCCCGATTCATAATGCTCCAGGGCCTTCCATGTCAAGAGGCAAACCATCCATTAGAAGTATCTTACCGAAATTGAACTTCAGGTATAAGATGTCATCTGATGTTGAAAAGGCTTCGACTGCAGCTCCGGAAAGTTCCTCACCGGTCCCTCGAGAAATGCTTTCAATTGCAAGATCATTGTCCCTTACTAAGATATTTACTCCTAGGATTAAGAGAACGTCATCATTACCAGTAGATGAAATTGTACATTCAAACCCAGAATCTGCTCATGCTGGAAGTGTTGGTGGTTCTCTATATAGAAGAGAGGGCCAGGGGCAGATAGCCCGCTCTCTTTCAGTGCCTGTTGATGATATAGATAAAAGAATGAGGAGAATGGATTCATTTTTCCGTATTATTCCTTCCACTCCTCGTGTAAAGGAAAAAAATGAATTGTTGACTACATCCCCAACAAAGGATACAGAAAATGCTGATGCTGATGGTGAAGATATAGCTGAAGAAGAGGCTGTGTGTAGGATTTGTTTGGTTGATCTATGCGAAGGAGGTGAGACCTTCAAGATGGAATGCAGCTGCAAAGGTGAACTTGCTCTGGCACACCAAGAATGTGCTGTTAAATGGTTTAGTATCAAGGGTAACAAGACCTGTGACGTGTGCAAGGAGGAGGTTCAGAACTTACCTGTCACTCTCTTGAGGATCCAAACTGTTCTAACTCAGAATGCTGGAGCTAGTTTGTCTCAGCAGGCAGATGTAAATGGATACAGGGTTTGGCAGGAAGTGCCAGTGCTTGTCATTGTTAGCATGCTTGCCTATTTCTGTTTTCTTGAGCAGCTATTGGTTGGTAAAATGGGTACTGGTGCAATTGCGATAGCTCTTCCATTTTCCTGTGTACTGGGTCTACTCTCCTCCATGACCTCATCAACCATGGTGAATAGCAGGTTCATCTGGATTTATGCATCTGCCCAGTTTGCTCTGGTGGTTCTTTTTGCACATATATTTTACTCCTTGGTTCACGTGCAGGCAGTTCTGTCAATCCTTCTCGCAACATTTGCTGGGTTTGGTATTGTGATGAGTGGGAGTTCTGTTCTTGTTGAGTTTTTCAGATGGAGAAGAAGATGGCAGGCTTTATCAGAGCAGCGTCGTGCTTCTCATGCAATGACGCAAGGAGGACAATTTCCAAGAACTGTAAATACACCACGTTCAGGCCCTCCCAACGGCAATCAAACCGTGGTGCTTAATCAACAAAACTTAATTCAGAGCTGA 1536 0.4362 MSTWEKVVSGDHDASSCKRTVSLPVQKVDDPMGTTKESIPARHWKRQNLLLEIPSRTSEEHYQDFVGIKMPLTPSPTPTPKRVNFLVTSRSVDVPIHNAPGPSMSRGKPSIRSILPKLNFRYKMSSDVEKASTAAPESSSPVPREMLSIARSLSLTKIFTPRIKRTSSLPVDEIVHSNPESAHAGSVGGSLYRREGQGQIARSLSVPVDDIDKRMRRMDSFFRIIPSTPRVKEKNELLTTSPTKDTENADADGEDIAEEEAVCRICLVDLCEGGETFKMECSCKGELALAHQECAVKWFSIKGNKTCDVCKEEVQNLPVTLLRIQTVLTQNAGASLSQQADVNGYRVWQEVPVLVIVSMLAYFCFLEQLLVGKMGTGAIAIALPFSCVLGLLSSMTSSTMVNSRFIWIYASAQFALVVLFAHIFYSLVHVQAVLSILLATFAGFGIVMSGSSVLVEFFRWRRRWQALSEQRRASHAMTQGGQFPRTVNTPRSGPPNGNQTVVLNQQNLIQS 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1712 511 CDD RING_CH-C4HC3_MARCH 263 311 - -
Glsi14g1712 511 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 248 318 IPR013083 -
Glsi14g1712 511 SUPERFAMILY RING/U-box 259 314 - -
Glsi14g1712 511 Pfam RING-variant domain 263 310 IPR011016 GO:0008270
Glsi14g1712 511 MobiDBLite consensus disorder prediction 472 498 - -
Glsi14g1712 511 ProSiteProfiles Zinc finger RING-CH-type profile. 255 317 IPR011016 GO:0008270
Glsi14g1712 511 PANTHER OS02G0165000 PROTEIN 30 478 - -
Glsi14g1712 511 SMART ringv_2 262 311 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1712 Glsi-ChrGlsi14 17455447 17461823 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1712 260 317 C3H Transcription Factor Family AT2G37950 45.763 3.97e-12 63.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi14g1712 14 17455447 17461823 Glsi04g0341 04 2179540 2184738 CCT
Glsi14g1712 14 17455447 17461823 Glsi14g1712 14 17455447 17461823 ECH