Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1693 ATGAAGGAAGCTGAGAAGGGCTTGGATCCGCAACTATGGCATGCGTGCGCCGGAGGTATGGTTAAGATGCCTCTGGTGAACTCCAAAGTCTTTTACTTTCCGCAAGGGCATGCCGAGCACGCCCAGGCCAACCTTATTATTGCGGCCTCCTTAAGGATTCCACCGCTCATTCTTTGCCGAGTGGCAGCAGTGAAATTCCTGGCTGACCCAGAAACCGATGAAGTTTTTGCTAAGATAATGTTGATTCCTATGAGAAATTCTGAGCTTGATGACGACGACGATGGGGTTTTGGATGGTAGTGGGTCTGAGAACTCAGAGAAACCATCATCTTTTGCCAAGACATTAACCCAATCTGATGCCAACAATGGTGGAGGCTTCTCGGTTCCAAGGTACTGTGCAGAAACTCTCTTTCCACCTCTGGATTACTCGGCCGAACCACCTGTTCAAACCGTGACTGCCAAGGATGTTCATAGTGAAATTTGGAAATTTAGGCACATATATAGAGGGACACCTCGTCGGCACTTACTAACAACTGGGTGGAGCAATTTCGTGAACCACAAGAAACTTGTTGCAGGGGATTCTATTGTTTTTCTTAGGGCTGAAAATGGGGATCTGTGTGCTGGAATTCGTCGAGCGAAGCGAGGAATCGGTGGCTGGAGCTCTGGCCCGGGAAATTGTATTGGACCTTGTGGGGCTGGGGCCTTTTCTATCTTCTTGAGAGAGGAGAACAGTCTATTGCCAAATGGTTGTGGCAGTTCAAGCCGTGGTCGTAATTTGAGTGGAAGAGAAAGAGTGAGGCCTGAAGCTGTCATGGAAGCGGTGACTCTGGCTGCCAGTGGTCAGCCATTTGAAGTTGTTTACTACCCTCGAGCCTGCACTCCAGAGTTCTGTATTAAGGCTTCAGCTGTGAGGGCTGCAATGAGAACTCAATGGTGCTCTGGGATGAGGTTCAAGATGCAATTTGAGACTGAGGATTCTTCTCGGACAAGCTGGTTCATGGGGACTATAACTTCTGTTCAGGTTGTTGATCCGGTGCGCTGGCCTAACTCCCCCTGGCGACTTCTTCAGGTTGCCTGGGATGAGCCAGATTTGCTACAAAATGTGAAGCGTGTTAACCCATGGTTAGTTGAATTGGTAGCAAACATGCCAGTCATCCATTTCACAACTTACTCTGCACCAAGGAAGAAGCTGAGGCTTACTCAGCACTTGGACTTCCCCCTTGACGGTCAATTTTCAATACCAACGCTTTCAGGCAACCCCCTTGGGCCTAGCAGCCCCTTGTGTTGTCTATCTGATAATGCTCCTACAAGCATACAGGGAGCCAGGCATTCTCAATTTGGAATATCTCTTCCAGATCTCCACCTTAACAATAAACTGCAGTTGGGGCTGCTTCCAACTAACATCCAGCAGCTTGATGTACATTCTGGGTTGTCTAATGGTCACATGGCCAACCATGGTAAGAACAATGAAAGTTTGCCACGCTTGCTGACTGTGGGAAATACTTGTAAGAGTTTGGAGAAATCTGATAATACCAAGAGACACCGATTTTTGCTTTTTGGTCAACCAATACTTACCGAGCAACAAATTTCTCGAAGCTGTTCTAGCGATATCATGTGTGGAGAAGATTTGCCAGATGAGAATAAGGACAAATCCAAGTGCATTTTTGGTGATTCCCAATCTGCCTTTTCACAAGGAAAATCTTCTTTTGTTGAGTATTCTTGGGAAATTGGCTCGGATACTGGTCATTGCAAGGTTTTCATGGAGTCAGAGGACGTGGGACGGACCCTGGACCTATCTCGTCTTGGTTCTTATGAAGAGCTTTACAGGAGACTTGCCAACATGTTTGGAATGGAAAGATCTGCCATATTGAGCCATGTGCTCTACTGTGATGAAACAGGTGTTGTTAAGCAAACTGGACAGGAACCCTTCAGTGACTTTATGAAAACAGCCAAAAGATTGACAATTCTCTCAGATGCAGGCAGCAAATATTTTTAA 1995 0.4667 MKEAEKGLDPQLWHACAGGMVKMPLVNSKVFYFPQGHAEHAQANLIIAASLRIPPLILCRVAAVKFLADPETDEVFAKIMLIPMRNSELDDDDDGVLDGSGSENSEKPSSFAKTLTQSDANNGGGFSVPRYCAETLFPPLDYSAEPPVQTVTAKDVHSEIWKFRHIYRGTPRRHLLTTGWSNFVNHKKLVAGDSIVFLRAENGDLCAGIRRAKRGIGGWSSGPGNCIGPCGAGAFSIFLREENSLLPNGCGSSSRGRNLSGRERVRPEAVMEAVTLAASGQPFEVVYYPRACTPEFCIKASAVRAAMRTQWCSGMRFKMQFETEDSSRTSWFMGTITSVQVVDPVRWPNSPWRLLQVAWDEPDLLQNVKRVNPWLVELVANMPVIHFTTYSAPRKKLRLTQHLDFPLDGQFSIPTLSGNPLGPSSPLCCLSDNAPTSIQGARHSQFGISLPDLHLNNKLQLGLLPTNIQQLDVHSGLSNGHMANHGKNNESLPRLLTVGNTCKSLEKSDNTKRHRFLLFGQPILTEQQISRSCSSDIMCGEDLPDENKDKSKCIFGDSQSAFSQGKSSFVEYSWEIGSDTGHCKVFMESEDVGRTLDLSRLGSYEELYRRLANMFGMERSAILSHVLYCDETGVVKQTGQEPFSDFMKTAKRLTILSDAGSKYF 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1693 664 SUPERFAMILY DNA-binding pseudobarrel domain 106 213 IPR015300 -
Glsi14g1693 664 Gene3D - 311 383 - -
Glsi14g1693 664 FunFam Auxin response factor 109 213 - -
Glsi14g1693 664 Pfam Auxin response factor 273 356 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Glsi14g1693 664 MobiDBLite consensus disorder prediction 102 118 - -
Glsi14g1693 664 ProSiteProfiles B3 DNA-binding domain profile. 111 213 IPR003340 GO:0003677
Glsi14g1693 664 ProSiteProfiles PB1 domain profile. 580 660 IPR000270 GO:0005515
Glsi14g1693 664 Gene3D - 109 213 IPR015300 -
Glsi14g1693 664 MobiDBLite consensus disorder prediction 91 118 - -
Glsi14g1693 664 FunFam Auxin response factor 311 384 - -
Glsi14g1693 664 Gene3D - 578 662 - -
Glsi14g1693 664 SMART B3_2 111 213 IPR003340 GO:0003677
Glsi14g1693 664 Pfam B3 DNA binding domain 111 212 IPR003340 GO:0003677
Glsi14g1693 664 CDD B3_DNA 110 211 IPR003340 GO:0003677
Glsi14g1693 664 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 659 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1693 Glsi-ChrGlsi14 17335007 17337386 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1693 5 662 B3 DNA Binding Superfamily AT4G30080 57.101 0.0 714
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Glsi14g1693 B3 1.5e-19 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi14g1693 14 17335007 17337386 Glsi04g0362 04 2292286 2295295 CCT
Glsi14g1693 14 17335007 17337386 Glsi14g1693 14 17335007 17337386 ECH