Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1692 ATGAAGGATCCTTGGTTCTTGGACAAGAATTTTAATGGTCTATCGGATGAAACGTTTGATGATTTCATAAAGTTTTTTGATTTCCCGCTGGAGGATGTGGAAACTAATCTTGCGGAAGAAGATTGGGATGCTCAATTTAAACGCATTGAAGAGCCATCTTTTGATGTTTTCTCAGTATCATCATCTGAATTGTGTGGTAAAACTCAAAATGACAATCCAAAACTTGGGAGGAGTTTCTCTGCTTCTTGTAATGAGGCTTCCCCCATAAAACAATCAGCAGAGAGTGCTAGAGCTACATATAGCAAAGGCTTTCCAAACCAGAATGTCTCTCCCAATGGAAAGGATCTGCTCCAGTTCCGTACCTACAGTCCAGTTTCTGTTTTTGAAAGCAGTAGTTCTTCCTGTGGTGAGAATTCCAACTTTGACCTACCTGTCATCCCAGTAAAGCGTGCTCGAGGGAGGCGCCGCCGTCTCTCAAGCTTCAGCCCTATATTGTCAGTTTCTTTCATCTCTACATCACCAGCTTTGCTAAAATCTCAAAGGACAGCTGCCTGTGTATCAGATTTCGAAACAGGGAAATTACTAAACAGAGTCAAAAGGAAGCAGAGGAAAAAGGATCTCTCCCTTCTCTCAGGTCACACCAATATGAACAGATCCTTATCAGAGGAGTCTTTTGCCCCTAGAAAATGCGTGCATTGTGAAGTGACAAAAACCCCACAATGGAGGGAGGGCCCTATGGGTCCCAAGACCTTGTGCAATGCATGTGGGGTTCGATACAGGTCCGGTCGCTTATTTCCTGAATACCGGCCTGCATCTAGTCCCACTTTTGTAGCATCATTGCATTCCAACTCCCACAAGAAGGTCATAGAGATGAGAAATAGAGTCATCCGCGAGACGGCTGGGGGTTCTATTTTGGGTTTATCATCAAACCTTCCTGCACATTTCAAAGACGAATATGGGATAATTGGACTAAGCGGCCTTGCCATTGCTTCCTTGATCAGCTGCAAGGACATCAAGTCAAGGATAAGCTCTGGCAGTGACAGTAATCACATGGCCCAAAACTATAGGGAAAGCATTTTCATGGCTATCTTGTGTCAGACCTCAAAGGCCAATAATTTTATACTTTTCAGCAGAGGGAAGTGCCTTGGCATTGGTACAGGTCGCGGGGAGTGTGTGGGAGTGGGAGCCAAGAGAAGAAAACCGACTGGGAAGGACGTTGAGATTGGCAGATTTGACTCAACTGCTCTGCAATTTGCGCAGTTCTACAATTCGCTGTCAATGGCGTGCGTGGTTGGAACCTTTCTGAAGCCGGAATTTGGAGTCTGGATGTGTATTCTCTCTGCTCTGGACCAATTGTTCTTTTCCTTCTTGCAGTGA 1377 0.4503 MKDPWFLDKNFNGLSDETFDDFIKFFDFPLEDVETNLAEEDWDAQFKRIEEPSFDVFSVSSSELCGKTQNDNPKLGRSFSASCNEASPIKQSAESARATYSKGFPNQNVSPNGKDLLQFRTYSPVSVFESSSSSCGENSNFDLPVIPVKRARGRRRRLSSFSPILSVSFISTSPALLKSQRTAACVSDFETGKLLNRVKRKQRKKDLSLLSGHTNMNRSLSEESFAPRKCVHCEVTKTPQWREGPMGPKTLCNACGVRYRSGRLFPEYRPASSPTFVASLHSNSHKKVIEMRNRVIRETAGGSILGLSSNLPAHFKDEYGIIGLSGLAIASLISCKDIKSRISSGSDSNHMAQNYRESIFMAILCQTSKANNFILFSRGKCLGIGTGRGECVGVGAKRRKPTGKDVEIGRFDSTALQFAQFYNSLSMACVVGTFLKPEFGVWMCILSALDQLFFSFLQ 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1692 458 FunFam GATA transcription factor 219 302 - -
Glsi14g1692 458 PANTHER GATA TRANSCRIPTION FACTOR 35 295 - -
Glsi14g1692 458 SMART GATA_3 224 274 IPR000679 GO:0006355|GO:0043565
Glsi14g1692 458 ProSitePatterns GATA-type zinc finger domain. 230 255 IPR000679 GO:0006355|GO:0043565
Glsi14g1692 458 CDD ZnF_GATA 229 276 IPR000679 GO:0006355|GO:0043565
Glsi14g1692 458 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 227 287 - -
Glsi14g1692 458 ProSiteProfiles GATA-type zinc finger domain profile. 224 260 IPR000679 GO:0006355|GO:0043565
Glsi14g1692 458 Gene3D - 221 298 IPR013088 GO:0006355|GO:0008270
Glsi14g1692 458 Pfam GATA zinc finger 230 263 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1692 Glsi-ChrGlsi14 17328395 17334702 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1692 8 294 C2C2-Gata Transcription Factor Family AT1G08010 39.590 1.06e-53 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Glsi14g1692 GATA 1.1e-16 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi14g1692 14 17328395 17334702 Glsi14g1692 14 17328395 17334702 ECH