LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi14g1686	ATGAATTTCTTCTTTCCTACTTATTTTACCTCATTTACATGCTTGTTCGCCAAAATTCGGGTCAGAAAAGTGTATGGGTTGGAAAAGATGAAGCTGCAACTCAAAGTTGCTCTTGCTTTTGTTATTAGCTTGCTCTGGATTCAGCACTCATTTTGTGGTGAACCTTCTGGTACTTCTGGCCTAAATAAATGGATATGTAGATGTTCTTTTCAAGGGAACCATAGCTCCTCTCTTGCTAATTGTTCTATGTCATGTGATTGTCGATTAGATGCTAAAGAGAGTCCATCCATATGGACATGCTTATGTGATCCCAATGGGTTTCCTAATGTGGAAGCAGATGGTCATAGTCCTAGTTGCTTTACCGCCTGCAACTGCACCTGGGGAACTCTCGACGTCTCACAAGGTTCAAAGAAACACATTTCCAACAAGATTGTTATAATTATTCTATTAATATGTGTTCTATGCACAACGGTTGCATTTCTTGCCTCGGTCATATGCTATGTGCGCCAAAGGGACAGATGTCCTATGCAACCACCCATATTCTCATCAGATAGGGAAACAAGTTGCAATAGTACCACCAACTTAATTAGTCATACAACTTCTTCAGTGCCAGAAACAAAAGTTGGTATAAAATCTCCCATTAATCATATCTCAGGGTGCTTTCTGAAGGCCTCTTTCTTGTTTGGGAGCAAAAGAGAAACTTTTCGTGGAAATATTATTCAATTTTCGTTTGCAGAACTGGAAAATGCCACTGAAAAATTTTCAGCTTCCAACCTTATTGGACTAGGTGGAAGTAGTTATGTATATCATGGTCAGCTGAAAAAAGGTACTAATGTGGCAATTAAGCGACTCAAAGCTCAAGAAAGGCCTGAAGCAGACTCTTTATTTTTGACTGAGATTGAACTACTATCTAGACTTCACCATTGTCATCTGGTGCCATTGCTTGGATACTGTTCAGAATTAAAAGGGAAACATGTTGAGAGGCTATTAGTATTTGAGTACATGACTAACGGCAGTTTGAGGGAAGGTTTAGATGGAGTTTCTGGAAAAAATATGGATTGGGCTACTCGTGTTACGATTGCAATAGGAGCTGCAAGGGGCTTGGAATATCTACATGAAGCGGCTGCTCCAAGAATTCTGCATAGAGATGTTAAATCGACAAACATTCTTCTGGATGAAAATTATCAAGCAAAAATAACTGATCTTGGTATGGCTAAAAACATAAGAGCTGATGACCTCCCTAGCTGTTCAAATTCTCCAGCAAGAATGCAGGGCACGTTTGGCTATTTTGCACCTGAGTATGCAATTGTTGGGAGAGCCTCTCTTAAGTCCGATGTCTTTAGTTTTGGAGTGGTTCTCCTGGAGATTATAAGTGGTCGGCAACCTATCTATAAATCTACAGGCAAAGAAGAAAGCCTTGTCATATGGGCTACTCCTCGTTTACAGGATAGTAGGCGAGTAATAACAGAGCTAGCTGATCCAGAATTGAAGGGAAACTTCCCAGAAGAAGAGATGCAGATATTGGCATACTTAGCAAAGGAGTGTTTGCTTTTGGATCCTGATACTCGGCCAACCATGAGTGAAGTTGTTCAAATTCTTTCAACTATATCACCAGACAAATCTAGGAGGAAAAGAAACATTCCAGTGAGCCTTTTCCAGGAACCAAATGATGCGGAGAAGCGAAGGCAAGCTCCATCTAGTAAATGTTTATCTCATAATCCATCATCACCAGATACTGACCGCAATCTTTGGGTTGGGAACAAAAGTGAAGAAGCAGATACAGTTTCAGCCCAGTATATGGAGAGTTTGGCCCTCGTGACTTCAAAAGATGAGAGCTGGCATGGATCAGAAGATGAAATGGTAGATCTCACTGAGCCTCGGTTTGAATCATTTTGTATGACAAACGTCAGTTCCCCTTGA	1920	0.4068	MNFFFPTYFTSFTCLFAKIRVRKVYGLEKMKLQLKVALAFVISLLWIQHSFCGEPSGTSGLNKWICRCSFQGNHSSSLANCSMSCDCRLDAKESPSIWTCLCDPNGFPNVEADGHSPSCFTACNCTWGTLDVSQGSKKHISNKIVIIILLICVLCTTVAFLASVICYVRQRDRCPMQPPIFSSDRETSCNSTTNLISHTTSSVPETKVGIKSPINHISGCFLKASFLFGSKRETFRGNIIQFSFAELENATEKFSASNLIGLGGSSYVYHGQLKKGTNVAIKRLKAQERPEADSLFLTEIELLSRLHHCHLVPLLGYCSELKGKHVERLLVFEYMTNGSLREGLDGVSGKNMDWATRVTIAIGAARGLEYLHEAAAPRILHRDVKSTNILLDENYQAKITDLGMAKNIRADDLPSCSNSPARMQGTFGYFAPEYAIVGRASLKSDVFSFGVVLLEIISGRQPIYKSTGKEESLVIWATPRLQDSRRVITELADPELKGNFPEEEMQILAYLAKECLLLDPDTRPTMSEVVQILSTISPDKSRRKRNIPVSLFQEPNDAEKRRQAPSSKCLSHNPSSPDTDRNLWVGNKSEEADTVSAQYMESLALVTSKDESWHGSEDEMVDLTEPRFESFCMTNVSSP	639

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi14g1686	639	SMART	serkin_6	254	536	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi14g1686	639	MobiDBLite	consensus disorder prediction	567	584	-	-
	Glsi14g1686	639	FunFam	receptor-like serine/threonine-protein kinase NCRK	335	545	-	-
	Glsi14g1686	639	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	379	391	IPR008271	GO:0004672\|GO:0006468
	Glsi14g1686	639	MobiDBLite	consensus disorder prediction	544	584	-	-
	Glsi14g1686	639	Gene3D	Transferase(Phosphotransferase) domain 1	335	554	-	-
	Glsi14g1686	639	PANTHER	OS01G0750732 PROTEIN	64	556	-	-
	Glsi14g1686	639	ProSiteProfiles	Protein kinase domain profile.	254	536	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi14g1686	639	CDD	STKc_IRAK	260	533	-	-
	Glsi14g1686	639	SUPERFAMILY	Protein kinase-like (PK-like)	235	533	IPR011009	-
	Glsi14g1686	639	FunFam	receptor-like serine/threonine-protein kinase NCRK	228	334	-	-
	Glsi14g1686	639	Pfam	Protein tyrosine and serine/threonine kinase	258	533	IPR001245	GO:0004672\|GO:0006468
	Glsi14g1686	639	Gene3D	Phosphorylase Kinase; domain 1	229	334	-	-
	Glsi14g1686	639	ProSitePatterns	Protein kinases ATP-binding region signature.	260	282	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi14g1686	Glsi-ChrGlsi14	17267709	17272506	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi14g1686	30	636	Receptor kinase-like Gene Family	AT2G28250	53.268	0.0	600

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-XVI	Glsi14g1686		PK_Tyr_Ser-Thr	3.6e-44	CL0016