Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1658 ATGGGAAGAGCTCCTTGTTGTGACAAGGCGAACGTGAACAAGGGACCGTGGTCACCAGAAGAAGACTCAAAGCTGAGAGAGTACATAGAGAAGCATGGGACCGGAGGGAGTTGGATTGCTCTTCCTCAGAAAGCTGGCCTAAAGAGATGTGGGAAAAGTTGCAGATTGAGATGGCTTAACTATCTCAGGCCCAACATTAAGCACGGAGAATTTTCTGATGACGAAGACAGAATAATTTGCAGCCTCTATGCTAGTATTGGAAGCAGGTGGTCAATTATAGCTGCTCAGTTGCCAGGCAGGACTGACAATAATATCAAGAACTACTGGAACACCAAGCTCAAGAAAAAGCTCATCGGGTTGGTTTCTGCATCTCACATGATACCTCCATTTCAATCCTTCCATGGAAACCCACCATTTCATTCTTCACAATCACTCTCATCGTCAATATACAGGGACTGCAGCTCTTACTACAGCCCAGCTCTTACGACAATCTCTCCGGCGAACTATTTCCCTTGTTTCCAAAACCGTGAGTCCTTGTTTAGTGCTAGTCCCATTCAAGATTATGGTATCGGAGACAATCTGATCGTGTTTGGGAGTGAAGGAAGTTGCAGTTCATCTGATGGAAGCTGTAGTCAGGTGACCCATTCCCATGAGGAAATAGGTATTCAGAAGTATATGTCCAGTGGGTTTGAAGAATACAGCAATAAGTTTATGCTTAGTTACGGGAGCAATAATATTAACCAGTGGGCAGAAGAGCCAAATGGGTGTTTTGGGCAAACCACATTGGATTATGATCTTGAGGACATTAAGCAACTGATAAATGGTAGCAGCGGTAATAATGATTATAATGGCTACTTCAATATGGATGAAAGGAAGGAAGACATAGGAGAAGGCCGTGTACTACTACTGAATGCAACTGATGACTGA 927 0.438 MGRAPCCDKANVNKGPWSPEEDSKLREYIEKHGTGGSWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFSDDEDRIICSLYASIGSRWSIIAAQLPGRTDNNIKNYWNTKLKKKLIGLVSASHMIPPFQSFHGNPPFHSSQSLSSSIYRDCSSYYSPALTTISPANYFPCFQNRESLFSASPIQDYGIGDNLIVFGSEGSCSSSDGSCSQVTHSHEEIGIQKYMSSGFEEYSNKFMLSYGSNNINQWAEEPNGCFGQTTLDYDLEDIKQLINGSSGNNDYNGYFNMDERKEDIGEGRVLLLNATDD 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1658 308 PANTHER OS09G0431300 PROTEIN 1 268 - -
Glsi14g1658 308 FunFam Transcription factor RAX3 7 68 - -
Glsi14g1658 308 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Glsi14g1658 308 CDD SANT 16 62 IPR001005 -
Glsi14g1658 308 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Glsi14g1658 308 Gene3D - 7 68 - -
Glsi14g1658 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Glsi14g1658 308 SMART sant 13 64 IPR001005 -
Glsi14g1658 308 SMART sant 67 115 IPR001005 -
Glsi14g1658 308 Gene3D - 69 126 - -
Glsi14g1658 308 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Glsi14g1658 308 CDD SANT 70 113 IPR001005 -
Glsi14g1658 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Glsi14g1658 308 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Glsi14g1658 308 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1658 Glsi-ChrGlsi14 16957974 16959341 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1658 1 119 MYB Transcription Factor Family AT5G57620 87.395 4.18e-75 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi14g1658 Myb_DNA-binding 1.8e-14 CL0123