Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1646 ATGGATGTTCACCAAGACACTCTGATGCACATTAATGAGTTTGAGATGCACGACTTCATCGAAGATACTAATTTTGATCAGTTTATCAATCTGATTCGTGGGGACAATGAAGACTTAATCTGTAACTTGGATTCTGACCTTATCAATGGCTGCTTAGTTGATAAACTATTTCTTTCATACCCTGCAAACCCATTTGAATATAATGATGCTGTGAATGTCTATGATCCAAGCTCTACAGTTGGCTCCTTCTCCTGTTTCGATGGAGAAGTCAATGGAGGAGGAGGAGAAGAAAATGATGGGGAGCATTCTTCTGAAACAGTCACCACCACAGAAACTACGAGTGCTAATGGCAAGCAGAGGCCAAATACTGATAGGTCCAGGACTTTGATTTCTGAGAGGAAGAGGAGAGGCCGAATGAAGGAGAAGCTTTACGCATTGCGTTCTTTGGTTCCCAACATAACTAAGATGGATAAGGCCTCTATCGTGGGCGATGCTGTATCATATCTGCAGCAGCTGCAAGAACAATCTAAGAAGCTGAAGGCCGAGGTTGCAGGACTTGAAGCATCCTTGTTAGCGTCAGAAAATTATCGAGGATCGGTTGAAAACCCCATGAAGGTTCAAGGCAACTACAACAACCATCCAATCTGCAAGAAGATTATGCAGATGAACGTGTTTCAAGTGGAGGAAAGAGGATTTTATGTGAAATTGGTGTGCAATAAAGGAGGAGGAGTGGCTGCCTCAATGTACAGGGCTCTTGAGTCTCTGGCAGGCTTCAATGTTCAGAATTCAAACTTGGCCACAGTTTCTGACAGACTTGTACTAACTTTTACAATGAATGTGAAAGGGTGTGAGCCAGAAATTAATCTGCCAAATTTGAAGCTGTGGGTGACAGGCGCTCTACTGAACCAAGGATTCGAATTCATTACAAATTTTCATGCTTGA 942 0.4268 MDVHQDTLMHINEFEMHDFIEDTNFDQFINLIRGDNEDLICNLDSDLINGCLVDKLFLSYPANPFEYNDAVNVYDPSSTVGSFSCFDGEVNGGGGEENDGEHSSETVTTTETTSANGKQRPNTDRSRTLISERKRRGRMKEKLYALRSLVPNITKMDKASIVGDAVSYLQQLQEQSKKLKAEVAGLEASLLASENYRGSVENPMKVQGNYNNHPICKKIMQMNVFQVEERGFYVKLVCNKGGGVAASMYRALESLAGFNVQNSNLATVSDRLVLTFTMNVKGCEPEINLPNLKLWVTGALLNQGFEFITNFHA 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1646 313 MobiDBLite consensus disorder prediction 88 133 - -
Glsi14g1646 313 SMART finulus 129 178 IPR011598 GO:0046983
Glsi14g1646 313 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 119 189 - -
Glsi14g1646 313 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 123 172 IPR011598 GO:0046983
Glsi14g1646 313 MobiDBLite consensus disorder prediction 105 124 - -
Glsi14g1646 313 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 121 188 IPR036638 GO:0046983
Glsi14g1646 313 Pfam Helix-loop-helix DNA-binding domain 128 173 IPR011598 GO:0046983
Glsi14g1646 313 Coils Coil 169 189 - -
Glsi14g1646 313 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 12 303 - -
Glsi14g1646 313 Gene3D - 115 189 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1646 Glsi-ChrGlsi14 16866547 16867843 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1646 1 305 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 52.229 3.33e-101 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi14g1646 HLH 4.6e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi14g1646 14 16866547 16867843 Glsi14g1646 14 16866547 16867843 ECH