Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1642 ATGGACATGGAAGCAGGCACGGAGGAGTTTGTGGGGTCGTCTAATAACGATGCGACTGTGAGCCACCTCGTGAAGGGGAAGCGGACCAAGCGGAAGAGGCCCATCTCCCCTTGTGATACCATCACTTGTAGCTCCTCCAGTGCCTCCGGCGCTGATTATGGCTCCACAACCACTTATGAGAGCACTGATCAGGAAGAGGAAGACATGGCTAACTGCTTAATTCTCTTGGCTCAAGGTCATAATAACCGACCTGAATTCCCTGCAATTAGTAAGACAGAAAGGGCCACCGCTACCGCCGCCAAAATTGGTTTCTATACGTATGAGTGCAAAACGTGTAACCGAACCTTCCCTTCGTTTCAAGCGCTAGGTGGGCACAGGGCGAGCCACAAAAAGCCTAAGCTCAAGCTGGATGAAAAGAAACCACCAACCCCACCACAACTTTTTGAAGAAGCAGGGCAGATCTATATTAAAGGCACCCCTCAAGTTTCTCTTGGATTAGCCGCTAATGGACTTGTCCATAGCAACAAGGCCAAGATTCATGAGTGTTCGATATGTGGGTCAGAATTCACATCTGGGCAAGCATTGGGTGGGCACATGAGGAGGCATAGGGCATCCGCAACCACTATTCCTCAGGCCATTGAGACAAGTTCTAACGCCATCTCCCCCGTGCAAGTTAAGCCCAGAAATATTCTACCATTAGAATTAGATCTTAACCTTCCAGCGCCGGAAGAAGATCTCAGGGATTCCAAGTTTCAGTTTACGCCGACACAAAAAACTTTGGTGCTGTCTGCTCCGTCTTTGGTGGATTGTCATTATTAA 819 0.4896 MDMEAGTEEFVGSSNNDATVSHLVKGKRTKRKRPISPCDTITCSSSSASGADYGSTTTYESTDQEEEDMANCLILLAQGHNNRPEFPAISKTERATATAAKIGFYTYECKTCNRTFPSFQALGGHRASHKKPKLKLDEKKPPTPPQLFEEAGQIYIKGTPQVSLGLAANGLVHSNKAKIHECSICGSEFTSGQALGGHMRRHRASATTIPQAIETSSNAISPVQVKPRNILPLELDLNLPAPEEDLRDSKFQFTPTQKTLVLSAPSLVDCHY 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1642 272 MobiDBLite consensus disorder prediction 1 37 - -
Glsi14g1642 272 MobiDBLite consensus disorder prediction 123 145 - -
Glsi14g1642 272 PANTHER ZINC FINGER PROTEIN ZAT5 55 255 - -
Glsi14g1642 272 SMART c2h2final6 180 202 IPR013087 -
Glsi14g1642 272 SMART c2h2final6 107 129 IPR013087 -
Glsi14g1642 272 SUPERFAMILY beta-beta-alpha zinc fingers 106 202 IPR036236 -
Glsi14g1642 272 ProSitePatterns Zinc finger C2H2 type domain signature. 182 202 IPR013087 -
Glsi14g1642 272 ProSitePatterns Zinc finger C2H2 type domain signature. 109 129 IPR013087 -
Glsi14g1642 272 Gene3D Classic Zinc Finger 104 202 - -
Glsi14g1642 272 Pfam C2H2-type zinc finger 107 132 - -
Glsi14g1642 272 Pfam C2H2-type zinc finger 180 204 - -
Glsi14g1642 272 ProSiteProfiles Zinc finger C2H2 type domain profile. 180 207 IPR013087 -
Glsi14g1642 272 ProSiteProfiles Zinc finger C2H2 type domain profile. 107 134 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1642 Glsi-ChrGlsi14 16838162 16838980 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1642 3 272 C2H2 Transcription Factor Family AT2G28200 43.871 2.94e-59 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi14g1642 zf-C2H2_6 1.8e-11 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi14g1642 14 16838162 16838980 Glsi04g0428 04 2812345 2813286 CCT
Glsi14g1642 14 16838162 16838980 Glsi14g1642 14 16838162 16838980 ECH
Glsi14g1642 14 16838162 16838980 Glsi04g0428 04 2812345 2813286 ECH