Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1640 ATGATTTCGAGGGCCACATCTGGTTTCCCAAATGTCCCTCAAGGGTTGCACATGTTTTCTGTGTCCGAAAATTTAGTTTCAGACACTGTTGAAGTAAACTCTGGCTCATCTTCACATTCTACCTCCCTCCTTTTCAGTATTTCTGTTCTCAAAGACAAGCTTAGTCAGCTGCAATCACTGGTGGGTGTTCTTATCTCCCCAGCTCAGATCCAACCCGAGTCTACTTCCATGGCCATAGCCGGCATGAATTCTATAATCCAGGAATTCATAGTGACTGCCACTTCAATGATGTTCACATGCCAACAGATGGTTCTTATATCCTCACCAGGTCCAGGTACTACTACTAATTGTGCTGACGCGTTGCGCCAGCAGCAACCTGATCAGGATCATAGGTTGCCTGGCAATTATAGAAACATAGGCGAAGATAGGGGGCAGAGTTTCTTTTCTAGTTCTGAAACCCTGGACTGGTTTGGTGAAAGTTATAATACCAATTGTAATCTTAAGGATGAGGATCCAAGTGTTGCAATTAGTGAAACCAACAACAGCAGGAGAGAATCGTCTCCGGGGGATGAAACTAATGAAGGGAATAAGGGGGTTTCCCCAAACAACTGTGATATAATTGAATTGCATGCTGCGGATTTGTTGGCTAAGTACACACATTATTGCCAAGTTTGCGGGAAAGGGTTTAAACGCGATGCGAATTTGAGAATGCACATGAGAGCTCATGGGGATGAGTACAAGACTAGTGCTGCCTTGAGCAACCCAATGAAGAATAAGGGGAAAGAGTGTTCGATGAGCACGAGGCCTAAGAAATATTCATGTCCGCAAGAAGGGTGCAGGTGGAACCGAAAGCATGCCAAGTTCCAGCCATTGAAGTCCATGATATGTGTGAAGAATCACTACAAGAGAACCCATTGCCCCAAAATGTACATGTGCAAGAGGTGCAACCAGAAGCAGTTCTCGGTGCTTTCTGATCTGAGGACCCATGAGAAGCACTGTGGGGATTTGAAGTGGCAGTGCTCGTGTGGTACTACGTTTTCCAGGAAAGACAAGCTCATGGGTCACGTTGCTTTGTTCGTAGGGCACGCTCCACTTATCAATGGCTTGTCATATACAGGAAAAGTAGAGCAGCAGGCATTGCAAGCACTCCAGAAACACGGTAGTTCAAGATGA 1173 0.4561 MISRATSGFPNVPQGLHMFSVSENLVSDTVEVNSGSSSHSTSLLFSISVLKDKLSQLQSLVGVLISPAQIQPESTSMAIAGMNSIIQEFIVTATSMMFTCQQMVLISSPGPGTTTNCADALRQQQPDQDHRLPGNYRNIGEDRGQSFFSSSETLDWFGESYNTNCNLKDEDPSVAISETNNSRRESSPGDETNEGNKGVSPNNCDIIELHAADLLAKYTHYCQVCGKGFKRDANLRMHMRAHGDEYKTSAALSNPMKNKGKECSMSTRPKKYSCPQEGCRWNRKHAKFQPLKSMICVKNHYKRTHCPKMYMCKRCNQKQFSVLSDLRTHEKHCGDLKWQCSCGTTFSRKDKLMGHVALFVGHAPLINGLSYTGKVEQQALQALQKHGSSR 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1640 390 ProSitePatterns Zinc finger C2H2 type domain signature. 222 242 IPR013087 -
Glsi14g1640 390 SUPERFAMILY beta-beta-alpha zinc fingers 218 244 IPR036236 -
Glsi14g1640 390 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 33 370 IPR044300 GO:0010044|GO:0010447
Glsi14g1640 390 MobiDBLite consensus disorder prediction 168 183 - -
Glsi14g1640 390 MobiDBLite consensus disorder prediction 168 201 - -
Glsi14g1640 390 Gene3D Classic Zinc Finger 205 277 - -
Glsi14g1640 390 FunFam Zinc finger protein 574 219 244 - -
Glsi14g1640 390 SMART c2h2final6 220 242 IPR013087 -
Glsi14g1640 390 SMART c2h2final6 310 332 IPR013087 -
Glsi14g1640 390 SMART c2h2final6 272 305 IPR013087 -
Glsi14g1640 390 ProSiteProfiles Zinc finger C2H2 type domain profile. 220 247 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1640 Glsi-ChrGlsi14 16828035 16829207 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1640 40 364 C2H2 Transcription Factor Family AT5G22890 50.893 6.13e-108 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi14g1640 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi14g1640 14 16828035 16829207 Glsi14g1640 14 16828035 16829207 ECH