LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi14g1632	ATGGCTATTGCTGGTCTACACAATGTGTCTGCGCTTGACTCTTCTTTCCTTAGGGATTCCCATTCTCATTCACCCAGGAGGCATGGAGATGGAGGGAGTGGAAGCACCCGGTCATCTTCACTCTTGCAAATGTGGCGAGAGATTGAGGATGAGCATGTGGTGAGTCAAGGCCAAGGAAGACCTGGTGAAGGATTGCTTGAACAAAGGAGTGAAGAGTTGATTGCTGACCTCTCACAGGAAAATATGCCAGATAGCCATGAGAGACGACAGAGACATGTGCTACAAGATGCAATTTTGGGTGAGAATGATTGTGAAACATGGTCTCAGTCACAAAGTCAGCATGAATCCCATGATGAGCGGGAGGAATTGAACAGTTCTAATGGTGATAACTCTTCTGATTTTGGAGAAGTTGAAAGGGAAAGGGTAAGGCAAATTTTTAGGGAATGGATGAATAGTGGTGCTAGGGATCATGCGTCAAACATTTCTCAAAGAAATAATAGTTCAAGGTCAGAATGGCTGGGTGAGACTGAGCAGGAGAGAGTGAGAATCATAAGGGAGTGGGCACAATCGAGTAGCCAGCAGAGAATTATTTCTTCTGGGGAAAACAGGGAAGAACAATCAGGTGAAATTGGTACCCAAATAGAACATGTTCGTGATGGATTTTCTGTTATTCAGAGTGAGGGTCAAATTGAGCATATGCGGAGAGGTATTCGTAAATTATGTGGCAGACAGGTTCTGCTTGATATGCTTAAGAAGGCTGAGAGGGAAAGGCAAAGAGAAGTTCAGGAGTTGTTGGACCATCGGGCTGTATCTCATTTCCCCCATCGCAACCGCATTCAGGCATTGCTCAGAGGCAGGTTCTTGAGAAATGATAGAACGGTTGATATTAACAGGTCCACTTCCATAGCTGAAAGTGAATTAGGATTATTGAGGCTAAAACAGACTGTATCAGGTCTAAGGGAAGGATTTTTCTCTAGAAAGAACAACTCTTGTTGCAGTCAAGTAACCTGCAACCTATCTGATACCTCATCTAACTGTGACATTGATGCTAATTCAAATGAACAAACTGGAGCCAGCAGTTTACAAATGGTCCCAACTGTGCCTTTTGAACAATCTGAGCCTAATAACAGCGGAAGTGGTAGACTTGGGATCTCAGATGGTCAGAATTGTACACAAGGAATCATAAATGAAAATTTAGATTTGCAAGACTCTGCTCACATAGAAGGGCGGCAGCCGCAGCTTTTGGAAATTGAGTCGAGAGATTGTCAATCATCATCCAGTGTTGAGATGGGGAGAAGAGATGGCAGTGGACAAAATGTTGTTGAGATGACTACTGAAGATACTGCTAATGGACATATGCAACAAAACTTAGGAATTGAAGATATGGAGCATAGCAATATGCAGGAATTTAGTGAGGTACACTATGAAGAATCTGAACTGCGTGATACAAGTAATGATGAAAATGGTTTATCAACTCACAGTGATGATATAGAAGGGAATATGGTTGATGATGATAATAGGAATGAATTTGCTGCTCTGGAAGGAGAGCAGAGAGAAGAACTTATTGAAAATGAAGGAACTGACGGCCATCAAACTAATGTTGAATGGAGAAATGGCACAGAAGAAACTGTGGGTGGTAATTCTCTCAGTAGTACAGCCAATGAGTGGCCTCAAAATATCTTGGGGAATGAAGATAGGGAAAACTCTCATCTGCAAGAAGCCCCTGAAATGTGGCAAGAAGATGGTGGCTTTCAGGAGGCTGTGGAAAATTGGTTAGGAGGACCTTCTAATCATGAGGTTGCTCCAGTTGGTAGAATTCATGGATTTTATTTTCCTGATGATGACAATGTGAACAGTGTGGAACTCAGGGAACTGCTAAATAGGAGAAGTGTCTCTAACCTCCTTCGCAGCAGTTTTCGCGAGAGTCTTGACCAGCTGATACAGTCATATGTTGAAAGGCAAGGTCATGCTCACATTGAGTGGGAGCTACAAGAAACAACCCCTTCTTCTGCCTCTGTGGAACAAGACCTGGAGCAGCAGAGTAGGGATCAGATTGTCAGTCAGGAGGATACTATTAACAGTCCACTTGACCAACCCTCCTCCCCAACACCTCCTTCTCAGCCTCTCTGGGAGCGGCAGTCACACCATGACAATTGGCCACAGTCCGACATGAATAATCAGCGTCTACGAATGGGGCATTCATTTTCTTTGGAGTGGGAGATTATCAATGATTTGAGGATTGACATGGCTAGGCTACAGCAAAGAATGAATAATATGCAGAGAATGCTGGAGGCTTGTATGGACATGCAGCTTGAATTGCAGCGCTCAATAAGACAAGAAGTTTCTGCAGCTCTAAATCGCTCAGCTGGTTCATCAGAAATGCATGACCATGATTCACCAGATGATAAGTCTAAATGGGAATGTGTGAGAAAAGGAATTTGCTGTATATGCTGCGAGAGCAATATTGATTCTTTGTTGTACAGATGCGGGCACATGTGCACGTGCTCAAAATGTGCCAACGAGTTGTTCCAAAGTAGAAGAAAGTGCCCAATGTGTCAAGCACCTGTGGTGGAGGTGATACGTGCTTATTCTATACTATAA	2601	0.4348	MAIAGLHNVSALDSSFLRDSHSHSPRRHGDGGSGSTRSSSLLQMWREIEDEHVVSQGQGRPGEGLLEQRSEELIADLSQENMPDSHERRQRHVLQDAILGENDCETWSQSQSQHESHDEREELNSSNGDNSSDFGEVERERVRQIFREWMNSGARDHASNISQRNNSSRSEWLGETEQERVRIIREWAQSSSQQRIISSGENREEQSGEIGTQIEHVRDGFSVIQSEGQIEHMRRGIRKLCGRQVLLDMLKKAERERQREVQELLDHRAVSHFPHRNRIQALLRGRFLRNDRTVDINRSTSIAESELGLLRLKQTVSGLREGFFSRKNNSCCSQVTCNLSDTSSNCDIDANSNEQTGASSLQMVPTVPFEQSEPNNSGSGRLGISDGQNCTQGIINENLDLQDSAHIEGRQPQLLEIESRDCQSSSSVEMGRRDGSGQNVVEMTTEDTANGHMQQNLGIEDMEHSNMQEFSEVHYEESELRDTSNDENGLSTHSDDIEGNMVDDDNRNEFAALEGEQREELIENEGTDGHQTNVEWRNGTEETVGGNSLSSTANEWPQNILGNEDRENSHLQEAPEMWQEDGGFQEAVENWLGGPSNHEVAPVGRIHGFYFPDDDNVNSVELRELLNRRSVSNLLRSSFRESLDQLIQSYVERQGHAHIEWELQETTPSSASVEQDLEQQSRDQIVSQEDTINSPLDQPSSPTPPSQPLWERQSHHDNWPQSDMNNQRLRMGHSFSLEWEIINDLRIDMARLQQRMNNMQRMLEACMDMQLELQRSIRQEVSAALNRSAGSSEMHDHDSPDDKSKWECVRKGICCICCESNIDSLLYRCGHMCTCSKCANELFQSRRKCPMCQAPVVEVIRAYSIL	866

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi14g1632	866	MobiDBLite	consensus disorder prediction	369	389	-	-
	Glsi14g1632	866	SUPERFAMILY	RING/U-box	813	859	-	-
	Glsi14g1632	866	ProSiteProfiles	Zinc finger RING-type profile.	814	853	IPR001841	-
	Glsi14g1632	866	MobiDBLite	consensus disorder prediction	481	503	-	-
	Glsi14g1632	866	MobiDBLite	consensus disorder prediction	155	172	-	-
	Glsi14g1632	866	MobiDBLite	consensus disorder prediction	104	136	-	-
	Glsi14g1632	866	MobiDBLite	consensus disorder prediction	155	175	-	-
	Glsi14g1632	866	Pfam	Zinc finger, C3HC4 type (RING finger)	812	858	-	-
	Glsi14g1632	866	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	789	864	IPR013083	-
	Glsi14g1632	866	PANTHER	RING/U-BOX SUPERFAMILY PROTEIN	448	866	-	-
	Glsi14g1632	866	Coils	Coil	742	769	-	-
	Glsi14g1632	866	MobiDBLite	consensus disorder prediction	540	560	-	-
	Glsi14g1632	866	MobiDBLite	consensus disorder prediction	707	726	-	-
	Glsi14g1632	866	Coils	Coil	243	270	-	-
	Glsi14g1632	866	CDD	mRING-HC-C3HC5_NEU1	814	863	-	-
	Glsi14g1632	866	MobiDBLite	consensus disorder prediction	665	697	-	-
	Glsi14g1632	866	MobiDBLite	consensus disorder prediction	17	39	-	-
	Glsi14g1632	866	MobiDBLite	consensus disorder prediction	665	726	-	-
	Glsi14g1632	866	MobiDBLite	consensus disorder prediction	112	126	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi14g1632	Glsi-ChrGlsi14	16778495	16782253	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi14g1632	814	860	C3H Transcription Factor Family	AT3G06140	40.426	4.59e-06	47.8

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Glsi14g1632	14	16778495	16782253	Glsi04g0433	04	2844432	2849207	CCT
	Glsi14g1632	14	16778495	16782253	Glsi14g1632	14	16778495	16782253	ECH