Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1621 ATGTCTCGCCGTGGTGGAGGAAGACAAAGTGAAATTCGTCGGGTGGAATCGTCTCCGGCGCCATCTCAATCCACTAGGGGTAGGGGCGGAGCTGCTGCTCGAGGTCGGACCCAAGGGCGACGGGGCCGTGGTGCTACTTCTGTTCCAGTCACTCCTGCTCCTCCGTCTCCGGCCACTACTCCGTCGGTAATGCAGGGTGCTCTCCCCATTTCGTCCACTTCGCAGCCAGCTACGGCTTCCACGGCATCTCCATCTGTAGGTTCGTCTTCGTCTTCGGCTTCGGCTTCGGCTTCAACTTCAGTAGATACTCTGAGTTATAAAGTTGAACAAGAGTTGACATTGCAGCCATCGGCACCCTCGTCCTCCAAAGCTGTGAGATTTCCTGATCGACCCGATTACGGTAAAATCGGAAGGAAGATTCAAATACGCGCAAATCATTTTCTTGTTCAAGTTGCCGATCGAGATCTCCATCATTATGATGTATCTATAACTCCAGAAGTTACATCAAAAAAGATCAACAGAAATGTGATAAGTCAGTTAATCCAATTGTACTATGAGTCACACTTGGGCAAGCGATTGCTAGCTTATGATGGCCGGAAGAGTATTTTTACAGCTGGTCCATTGCCCTTCACCACAAAAGAATTCGTGGTCAGGTTGGAAGACAAAGAAGAACATGCCGGTTCAGCCAGAAGAGGACGTGAGCGCGAGTTTAAGGTCACTATTCGATATGCTTCTACGGCAGACCTCCATCATCTGCAGCAGTTTCTAAATCGTCGACAGCTGGACAGTCCACAGGAAACCATTCAAGCTCTTGATGTTGTTTTGAGGGCATCGCCATCAGAGAAGCACACTGTTGTGGGAAGGTCGTTTTTCTCACCCTTTTTGGGTCCAAGGGGTGAGCTTGGTGATGGTATAGAATACTGGAGAGGATATTATCAAAATGTATCTGCCAGGTCATTCTATGAACCTATTGTGGTGACTGAATTTATAGCAAAACATCTTAATTTGAATTTTTCAAGGCCTCTATCTGATCAGGACCGTGTGAAGGTTAAGAAAGCTTTGAAAGGAATTAAGGTAGAACTTACTCATGGTCAGTATACTAAAAGTTACAAAGTTACTGCAGTCTCAAGAGAACCACTCGGCGAGTTAATGTTTACTCTTGATGACAATAGAACAGAAATGACTGTTGTTCAATATTTCCGTGAGAGATACGGTGTTGTGCTCAAGTATTTGGCTCTTCCTGCCCTCCAAGCTGGGAGTGACACAAGGCCTATTTATTTGCCTATGGAGCTCTGTCAAATTGCTGCTGGACAGAGGTACTCCAAGAAATTGAATGAGAAGCAAGTAACTGCACTTTTAAATGCAACCTGTCAGCGACCTCTTGACAGGGAAAATAACATTAAACAGATGGTTAGGCATAACAATTTCAACAGAGACAAGCTTGTGCAGGAATTTGGAATTCAAGTGAGGGAAGATCTTGTGTTGTGTGATGCACGTGTTTTGCCTCCACCGATGCTTAAATATCATGAAACTGGGAGAGAATCAAATGTTGAACCCTCTAGGGGTCAGTGGAATATGATAAATAAGAAAATGATTGATGGTGGAAAGGTGCTATATTGGACTTGTCTCAACTTTTCTACACGATCAAACAGAGATTTGCCATTTCAATTTTGTAGTGAGCTGGTTAATATGTGTATCAGCAAGGGAATGGTTTTCAACCATGACCCTTTACTTCCTATAAGCTCAGTTCATCCTAGTCAAATAGAGAGAGCTCTCGTGGATGTTCATAAGCAGTCTACTGCAAAAATTGCTAACATGAAGCAGCAGGGGAACCTTCAGTTGTTGATTATAATCTTGCCTGATAACAAAGGGTCTTATGGAAAGATAAAACGCATATGTGAAACAGAATTGGGAATAGTGTCTCAGTGCTGTCAACCCAGGCAAGCTGCAAAGCTAAATAAGCAATATCTTGAAAATGTGGCCCTCAAGATTAATGTTAAGGTAGTGGCATCCATGGATTGGCCAGAGGTCACAAAGTACAGGGGAATTGTGTCTGCCCAGACTCACCGTGAGGAAATTATACAAGATCTCTATAAATCATTTAAGGATCCTCAGAGGGGAATTGTCCACAGTGGAATTATTAGGGAGCTACTTATTGCATTTTATAAATCAACCAAAGTTAAGCCTCACAGGATCATATTCTACAGAGATGGAGTTAGTGAAGGCCAATTCAGTCAGGTTTTGCTTTACGAGATGGAAGCAATAAGAAAGGCTTGTGCTTCATTGGAGGAAAATTATCAACCAAGAGTAACCTTTGTGGTGGTACAGAAAAGACATCACACCCGTTTCTTTCCTGTAAATCACAACAACCGGGATCAGACAGATAAAAGTGGAAATATTCTGCCAGGTACTGTTGTAGATACAGCTATTTGCCACCCGAGAGAACATGATTTTTACCTCAACAGCCATGCTGGAATTAAGGTATGCAAGATGCACTCGATCATTCCTCCTGCCTATTATGCACACCTGGCTGCTTTTCGAGCTCGATACTACATTGAAGGTGAGACATCAGAAGTAGATACTGCAAGTGGAAGTAGGATAGTGACCCTTCCCTCAATCAAGGAGAATGTGAAAGATGTTATGTTTTACTGCTGA 2655 0.435 MSRRGGGRQSEIRRVESSPAPSQSTRGRGGAAARGRTQGRRGRGATSVPVTPAPPSPATTPSVMQGALPISSTSQPATASTASPSVGSSSSSASASASTSVDTLSYKVEQELTLQPSAPSSSKAVRFPDRPDYGKIGRKIQIRANHFLVQVADRDLHHYDVSITPEVTSKKINRNVISQLIQLYYESHLGKRLLAYDGRKSIFTAGPLPFTTKEFVVRLEDKEEHAGSARRGREREFKVTIRYASTADLHHLQQFLNRRQLDSPQETIQALDVVLRASPSEKHTVVGRSFFSPFLGPRGELGDGIEYWRGYYQNVSARSFYEPIVVTEFIAKHLNLNFSRPLSDQDRVKVKKALKGIKVELTHGQYTKSYKVTAVSREPLGELMFTLDDNRTEMTVVQYFRERYGVVLKYLALPALQAGSDTRPIYLPMELCQIAAGQRYSKKLNEKQVTALLNATCQRPLDRENNIKQMVRHNNFNRDKLVQEFGIQVREDLVLCDARVLPPPMLKYHETGRESNVEPSRGQWNMINKKMIDGGKVLYWTCLNFSTRSNRDLPFQFCSELVNMCISKGMVFNHDPLLPISSVHPSQIERALVDVHKQSTAKIANMKQQGNLQLLIIILPDNKGSYGKIKRICETELGIVSQCCQPRQAAKLNKQYLENVALKINVKVVASMDWPEVTKYRGIVSAQTHREEIIQDLYKSFKDPQRGIVHSGIIRELLIAFYKSTKVKPHRIIFYRDGVSEGQFSQVLLYEMEAIRKACASLEENYQPRVTFVVVQKRHHTRFFPVNHNNRDQTDKSGNILPGTVVDTAICHPREHDFYLNSHAGIKVCKMHSIIPPAYYAHLAAFRARYYIEGETSEVDTASGSRIVTLPSIKENVKDVMFYC 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1621 884 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 123 826 - -
Glsi14g1621 884 Gene3D - 528 662 - -
Glsi14g1621 884 Gene3D - 663 829 IPR036397 GO:0003676
Glsi14g1621 884 Pfam Argonaute linker 1 domain 286 315 IPR014811 -
Glsi14g1621 884 Pfam Mid domain of argonaute 519 597 IPR032473 -
Glsi14g1621 884 Gene3D paz domain 318 440 - -
Glsi14g1621 884 CDD PAZ_argonaute_like 323 435 - -
Glsi14g1621 884 SUPERFAMILY PAZ domain 320 477 IPR036085 GO:0005515
Glsi14g1621 884 MobiDBLite consensus disorder prediction 60 97 - -
Glsi14g1621 884 SMART PAZ_2_a_3 333 456 IPR003100 GO:0005515
Glsi14g1621 884 SMART DUF1785_2 284 323 IPR014811 -
Glsi14g1621 884 SMART Piwi_a_2 614 853 IPR003165 GO:0003676
Glsi14g1621 884 ProSiteProfiles PAZ domain profile. 324 436 IPR003100 GO:0005515
Glsi14g1621 884 MobiDBLite consensus disorder prediction 1 97 - -
Glsi14g1621 884 Pfam N-terminal domain of argonaute 138 275 IPR032474 -
Glsi14g1621 884 Pfam PAZ domain 349 452 IPR003100 GO:0005515
Glsi14g1621 884 SUPERFAMILY Ribonuclease H-like 605 853 IPR012337 -
Glsi14g1621 884 Gene3D - 830 884 IPR036397 GO:0003676
Glsi14g1621 884 ProSiteProfiles Piwi domain profile. 668 825 IPR003165 GO:0003676
Glsi14g1621 884 ProSiteProfiles Piwi domain profile. 614 667 IPR003165 GO:0003676
Glsi14g1621 884 Pfam Piwi domain 668 826 IPR003165 GO:0003676
Glsi14g1621 884 Pfam Argonaute linker 2 domain 462 508 IPR032472 -
Glsi14g1621 884 FunFam Argonaute 10 500 673 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1621 Glsi-ChrGlsi14 16582146 16588292 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1621 114 884 Eukaryotic Initiation Factors Gene Family AT1G48410 50.899 0.0 885