Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1619 ATGGCGGAGGACCGCACCGGCGATAGGAATGAGACCGGTGAGTGCACTTCAGAAGACGAAGGAACAGAAGATTATAGGCGAGGAGGATACCACGCGGTTCGAATTGGAGATACTTTCAAAAATGGGTGCTATGTGGTGCAGAGCAAGCTTGGCTGGGGTCATTTTTCCACCGTGTGGCTTGCTTGGGACATCCAGAGATCGCGTTATGTAGCCCTAAAAATTCAAAAGAGTGCTCAGCACTATACTGAAGCTGCAATGGATGAAATAAAGATTCTCAAACAGATTGCAGAGCAGGACCCAGATGACAAAAAATGTGTTGTAAAGCTTTTGGATCACTTTAAGCATTCGGGGCCCAATGGTCAGCATGTATGTATGGTTTTTGAATTTCTAGGTGACAATCTTCTGACACTTATCAAGTATAGTGATTACCGAGGGCTACCTCTGCCCATGGTTAAAGAAATTTGTTTCCATATTTTGGTGGGCTTGGATTACTTGCATCGCGAGCTTTCCATAATACATACAGATTTGAAGCCAGAGAATGTCTTGCTTCTGTTAATGATAGATCCGTCTAAGGATCACAGAAAGTCAGGTGCCTCACTTATCATTCCTAGCACCAAGGATAATACGGTATCAAAGAGTGGAGTCACTAAAGACAATAAAAGTTTAAATGGAGAGATGAGCAAGAACAATAAAAACAAAATGCTGAGAGAGGCTAAGAGGGCAGCTTGTGTTGAGAAGGAAAGTACTGAGGAAGCTGATGAGGATTCTAATGATCCTGATCAAGAAGATTGTAGCAATGATCTGAAATCAAATGCAGAATTTGTTGAAGATAAGCCCAGTAATTCTGTGAGTAAAGATGAATTGGGAAAGATTGCTGAAACTAAGGATGTTATGCAAGGAAATCATGGCCATAGGAAAAGTAGCCATTCCACAAGAAAGAAGTTGCTTGCAGCTGTTGATCTTAAGTGCAAGCTGGTTGATTTTGGAAATGCTTGTTGGACTTATAAACAATTCACAAATGATATTCAGACAAGGCAGTATAGGTGTCCTGAGGTTATTCTTGGATCTAAATACTCAACTCCAGCAGATCTATGGTCCTTTGCTTGCATTTGCTTTGAACTTGCCACTGGCGATGTTCTTTTTGATCCTCACAGTGGTGAAAACTATGATAGGGATGAGGATCATCTGGCATTGATGATGGAGCTTCTTGGAATGATGCCTCGCCAGATTGCCCTAAGTGGCCGCTATTCTCGGGAATTTTTCAATAGACATGGTGATTTGAGGCACATTCGTAGGTTGCGTTTCTGGCCTCTTAATAAGGTGCTGATGGAGAAGTATGATTTCAATGAGCAAGATGCAAATGACATGGCTAACTTCCTTGTTCCAATACTTGATTTTGTCCCGGAAAAGAGGCCAACAGCTGCTCAGTGCCTTAATCATACATGGTTCAGCGCTGGTCCTCGGATTCTTCAGCCCTCAGTGACCACTGTGCAACCAGAGGCTGGGGATGGGGGAATGCTTGAAAAGATGAAGAGGGAAAAGGCTGAGCGAGAGGCAGTGGAGGTTGGTGTGGGGAATATAGCCATTGATGGAACTCCAAAGCCACTCTAA 1611 0.4327 MAEDRTGDRNETGECTSEDEGTEDYRRGGYHAVRIGDTFKNGCYVVQSKLGWGHFSTVWLAWDIQRSRYVALKIQKSAQHYTEAAMDEIKILKQIAEQDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEFLGDNLLTLIKYSDYRGLPLPMVKEICFHILVGLDYLHRELSIIHTDLKPENVLLLLMIDPSKDHRKSGASLIIPSTKDNTVSKSGVTKDNKSLNGEMSKNNKNKMLREAKRAACVEKESTEEADEDSNDPDQEDCSNDLKSNAEFVEDKPSNSVSKDELGKIAETKDVMQGNHGHRKSSHSTRKKLLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVILGSKYSTPADLWSFACICFELATGDVLFDPHSGENYDRDEDHLALMMELLGMMPRQIALSGRYSREFFNRHGDLRHIRRLRFWPLNKVLMEKYDFNEQDANDMANFLVPILDFVPEKRPTAAQCLNHTWFSAGPRILQPSVTTVQPEAGDGGMLEKMKREKAEREAVEVGVGNIAIDGTPKPL 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1619 536 SUPERFAMILY Protein kinase-like (PK-like) 39 493 IPR011009 -
Glsi14g1619 536 Pfam Protein kinase domain 320 483 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi14g1619 536 Pfam Protein kinase domain 44 183 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi14g1619 536 Gene3D Transferase(Phosphotransferase) domain 1 127 484 - -
Glsi14g1619 536 Gene3D Phosphorylase Kinase; domain 1 20 126 - -
Glsi14g1619 536 CDD STKc_SRPK 33 483 - -
Glsi14g1619 536 MobiDBLite consensus disorder prediction 206 229 - -
Glsi14g1619 536 MobiDBLite consensus disorder prediction 1 23 - -
Glsi14g1619 536 FunFam CMGC/SRPK protein kinase 30 129 - -
Glsi14g1619 536 ProSitePatterns Protein kinases ATP-binding region signature. 50 73 IPR017441 GO:0005524
Glsi14g1619 536 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 13 503 - -
Glsi14g1619 536 MobiDBLite consensus disorder prediction 206 287 - -
Glsi14g1619 536 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Glsi14g1619 536 MobiDBLite consensus disorder prediction 230 247 - -
Glsi14g1619 536 FunFam Serine/threonine-protein kinase SRPK-like protein 313 483 - -
Glsi14g1619 536 ProSiteProfiles Protein kinase domain profile. 44 483 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi14g1619 536 MobiDBLite consensus disorder prediction 262 287 - -
Glsi14g1619 536 SMART serkin_6 44 483 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi14g1619 536 MobiDBLite consensus disorder prediction 292 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1619 Glsi-ChrGlsi14 16564355 16567614 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1619 1 534 EF-hand Containing Proteins AT5G22840 64.552 0.0 718
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Glsi14g1619 Pkinase 3.8e-20 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi14g1619 14 16564355 16567614 Glsi04g0442 04 2951317 2955227 CCT
Glsi14g1619 14 16564355 16567614 Glsi14g1619 14 16564355 16567614 ECH