Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1608 ATGGAGGACCAAAATTATACCGTCACTAAGTCTCCGACATCTGCCCAGACCGAGCCTCCTGGGAGGAGCACGGGGTTGGACGAGGCAGCGAAGGATGCTGACGCCGTGCCGGATGTAATGGGAGCTGTCGGAGTTCAGTCTGTCGCCGGAGGAAAATCTGAGACTGTCTGTTCGGAAATAGGGGTGAAGAAGAGAAGGGGGAGACCTCGGAAGTACGATGTAAATGGGCACCTGGTATCCCCGGCATCGGCGCCAACAAGCATTTCCAATTACTCGCTTGGAAGCTCTGTTAAGCGAGGCAGAGGACGGCCTCGTGGTTCCGGGAAATTGCAGCTTTTGGCATCCATTGTTGGAGATCTAGCTCGACTCCCTCAAGACTACTGGGCCAATCCCATTGAGGAAGTAAATTTTTTGTTTAGGGTGGACTTGGGATATCCGGGGTTCATCAATTCCCATAGAACTTTCGTTTTGGTGCACCTGGGATTTACAATAGCTAGGATACCTCAGCTACATCCACTTGTGGGTGGAATTGTTGCAGACACAGCTGGGGGAAGCTTAATCCCTCATGTAGTGACCGTGAATACTGGGGAGGATGTGGTGAGTAGGATATTATCATTTTCTCTAAGAGGCTCTCGGGCTATTTGCATACTTTCTGCTACTGGCGCAGTATCCAGTGTTATCATTCGCCAATCTGGTTGTTCTGGCGGTGTTTTGAGATATGAGGGCCGCTTTGAGATTCTATCTTTAACTGGGTCATATACCGCTGATGGCATTGGTGGTGGACGTCGCAAAAGTGGCACGTTGAGCGTTTCACTGGCTAAACCTGATGGGAGGGTTTTTGGAGGAGGCGTTGAGGGCTCATTAATAGCGGCTGGCCCTATTCAGCTAATTGTGGGCAGTTTCAAGCAAAACATCAGTAAGGAAATCAGAAGGAGACATCCAGATTCGACAACATCTGGACTTGTGGGGACAACTAATGGATTTCCTGATAATGTCATTCCTGCAATAACTGATGGATTGCCCGATAATGTCATTACTGCAACAAGTAATGGATTACGAGATGATGTCATCTATGGGACAACTAGTGGAGTACCAGATAATGTCATTCCTATGCACTCTGCTTCTTCAAATGGTATTGGCCAAGACATACAACCCATCGCTGACCCTCGGATATAA 1176 0.4855 MEDQNYTVTKSPTSAQTEPPGRSTGLDEAAKDADAVPDVMGAVGVQSVAGGKSETVCSEIGVKKRRGRPRKYDVNGHLVSPASAPTSISNYSLGSSVKRGRGRPRGSGKLQLLASIVGDLARLPQDYWANPIEEVNFLFRVDLGYPGFINSHRTFVLVHLGFTIARIPQLHPLVGGIVADTAGGSLIPHVVTVNTGEDVVSRILSFSLRGSRAICILSATGAVSSVIIRQSGCSGGVLRYEGRFEILSLTGSYTADGIGGGRRKSGTLSVSLAKPDGRVFGGGVEGSLIAAGPIQLIVGSFKQNISKEIRRRHPDSTTSGLVGTTNGFPDNVIPAITDGLPDNVITATSNGLRDDVIYGTTSGVPDNVIPMHSASSNGIGQDIQPIADPRI 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1608 391 CDD DUF296 188 301 IPR005175 -
Glsi14g1608 391 MobiDBLite consensus disorder prediction 1 21 - -
Glsi14g1608 391 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 25 312 IPR039605 GO:0003680
Glsi14g1608 391 Pfam Plants and Prokaryotes Conserved (PCC) domain 188 302 IPR005175 -
Glsi14g1608 391 ProSiteProfiles PPC domain profile profile. 183 325 IPR005175 -
Glsi14g1608 391 MobiDBLite consensus disorder prediction 1 29 - -
Glsi14g1608 391 SUPERFAMILY AF0104/ALDC/Ptd012-like 186 307 - -
Glsi14g1608 391 Gene3D - 188 321 - -
Glsi14g1608 391 SMART AT_hook_2 98 110 IPR017956 GO:0003677
Glsi14g1608 391 SMART AT_hook_2 63 75 IPR017956 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1608 Glsi-ChrGlsi14 16470758 16473014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1608 62 312 AT-hook Motif Nuclear Localized (AHL) Family AT4G25320 41.762 5.27e-49 169