Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1601 ATGAATACGACAACTTATCTGGTGAGGCTCATTCTTTGAAAACCTGATACAAAGAGCGAACTTGCCAAGGGTGCTGCGTCGAAAAATAATGTTGCCAAGGCTGATGAATCGAAAAAGCAAGTGAAGGTTGTTGATCCCAAGAAGGATGAAGACGATGATTCTGAAGACGAGGATGATGAATCTGATGACGAAGATGATGAAAATGCAAGTTCTGATGAGGATTTGATGGATGCTGATGGTGGTAGTGATGAAGATGATGGGGTGACACCTCCTAAGAAGGCGGGTCAGGGTAAGAAGAGACCCAATGATTCTGCATCAAAAACTCCAATTTCTGCCAAGAAAGCTAAATCCGATGGTAAGAAAGGTGGTCATACTGCAACTCCTCACCCGATGAAGAAGGGTGGGAAGAGTCCTACTAGTGATGCCAAGGAGCCCAAGTCAGCTGGACAATTATCATGCAAATCTTGTACCAAGACTTTCACATCTGAAAGTGGTCTGCAACAACATAAAAAGGCAAAGCATGGTGGTCAGTGA 534 0.4401 MNTTTYLVRLILXKPDTKSELAKGAASKNNVAKADESKKQVKVVDPKKDEDDDSEDEDDESDDEDDENASSDEDLMDADGGSDEDDGVTPPKKAGQGKKRPNDSASKTPISAKKAKSDGKKGGHTATPHPMKKGGKSPTSDAKEPKSAGQLSCKSCTKTFTSESGLQQHKKAKHGGQ 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1601 177 MobiDBLite consensus disorder prediction 50 84 - -
Glsi14g1601 177 MobiDBLite consensus disorder prediction 23 177 - -
Glsi14g1601 177 ProSitePatterns Zinc finger C2H2 type domain signature. 153 174 IPR013087 -
Glsi14g1601 177 MobiDBLite consensus disorder prediction 85 100 - -
Glsi14g1601 177 Gene3D Classic Zinc Finger 151 177 - -
Glsi14g1601 177 MobiDBLite consensus disorder prediction 143 166 - -
Glsi14g1601 177 ProSiteProfiles Zinc finger C2H2 type domain profile. 151 177 IPR013087 -
Glsi14g1601 177 MobiDBLite consensus disorder prediction 32 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1601 Glsi-ChrGlsi14 16441215 16442503 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1601 101 174 C2H2 Transcription Factor Family AT5G03740 50.562 5.57e-15 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi14g1601 None None None