Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1600 ATGGAGTTTTGGGGTGTTGAGGTTAAGGTTGGGGAGCCTGTTAAAGTAGATCCCAAAGATTTTGATGCATACGTGCACATTTCTCAGGCCGCTCTTGGTGAGGCAAAGAAAGACAAAGGAGGTGAACCTGTGGTTCTTTACTTGAAATTTGATGACCAGAAGTTTGTTTTGGGAACGCTTTCAAGGGATAATTTCCCCCAGATATCTTTTGACATAGTTCTTGAAAAAGAGTTTGAGCTCTCCCACAATTCTAAAAATGGGAGCGTCTATTTCTGTGGATACAAGGCAGAAATTCCTGATGATGAATATCCTTGA 315 0.4127 MEFWGVEVKVGEPVKVDPKDFDAYVHISQAALGEAKKDKGGEPVVLYLKFDDQKFVLGTLSRDNFPQISFDIVLEKEFELSHNSKNGSVYFCGYKAEIPDDEYP 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1600 104 FunFam Histone deacetylase HDT1 1 100 - -
Glsi14g1600 104 Gene3D Nucleoplasmin core domain 1 101 - -
Glsi14g1600 104 Pfam Nucleoplasmin-like domain 3 94 IPR041232 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1600 Glsi-ChrGlsi14 16439682 16440804 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1600 1 102 C2H2 Transcription Factor Family AT5G03740 54.902 4.03e-32 112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi14g1600 14 16439682 16440804 Glsi04g0457 04 3069880 3070595 CCT
Glsi14g1600 14 16439682 16440804 Glsi14g1600 14 16439682 16440804 ECH