Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1561 ATGGGTCTGAGGGAGTGCAATGTAGAAGACAAGAATCTGTACTTGCATGCCCCAACTTTCATTGAATGGCTCAAACCATCTTCATCTCCTTCTTCTGCATCCATATCCTCTTCAGTATCTTCTCCTTCTTCTGTGACTCAACACGATCGGCTCGTCCGAGAGACTATTCAGTTTTTGCCCACTTTAAGTGGGTTCACTCCGGGAAAGCGAAAGGAGGAAGACATTGGAGTGAAAGAAGAGAAGGTAGAGAAAGTGACTGTGGCTTTGCACATTGGATTACCTAACACAAAAGAATTGGAGGATGAGAAGAAGGTTTTTGAGGTGAAGGAAGAAGAAGTGGTGAATAAAAGCTTTCACGGCTGCTCCAATTTGAACCCAGAGAGAAGGTTCTGGATACCAACTCCTGCACAGATCCTGGTCGGGCCGATGCAATTTGCTTGCTCCATATGCAGCAAGACCTTCAATAGGTACAACAACATGCAGATGCACATGTGGGGGCATGGGTCAGAATTTAGGAAAGGACCAGACTCACTTAGAGGAACACAACCAGCAGCAATGCTAAGGCTACCATGTTACTGTTGTGCCCACGGCTGCAAGAACAACATCAATCATCCCAGAGCAAAGCCATTGAAAGACTTCAGAACCCTTCAAACCCACTACAAAAGAAAGCATGGGGCTAAACCTTTTATGTGCAGAAAATGTGCCAAAACTTTCGCAGTTAAAGGGGATTGGAGGACTCATGAGAAGAACTGTGGAAAGTTGTGGTACTGCACATGTGGTTCAGATTTCAAGCACAAAAGATCTCTCAAAGACCATATCAGATCATTTGGAAAGGGTCACAATCCACATCCTTCTCTTGAAGGTTTCGAGGATGAAAATGATAAGGAATCCATCACTGGGTCCGAAGATGAAGTTGCTTACACATGA 927 0.4466 MGLRECNVEDKNLYLHAPTFIEWLKPSSSPSSASISSSVSSPSSVTQHDRLVRETIQFLPTLSGFTPGKRKEEDIGVKEEKVEKVTVALHIGLPNTKELEDEKKVFEVKEEEVVNKSFHGCSNLNPERRFWIPTPAQILVGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLRGTQPAAMLRLPCYCCAHGCKNNINHPRAKPLKDFRTLQTHYKRKHGAKPFMCRKCAKTFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHNPHPSLEGFEDENDKESITGSEDEVAYT 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1561 308 SUPERFAMILY beta-beta-alpha zinc fingers 215 249 IPR036236 -
Glsi14g1561 308 ProSiteProfiles Zinc finger C2H2 type domain profile. 145 172 IPR013087 -
Glsi14g1561 308 Gene3D Classic Zinc Finger 227 276 - -
Glsi14g1561 308 ProSitePatterns Zinc finger C2H2 type domain signature. 147 167 IPR013087 -
Glsi14g1561 308 PANTHER ZINC FINGER PROTEIN WIP2 24 298 IPR043584 GO:0003700|GO:0010468
Glsi14g1561 308 FunFam Zinc finger protein WIP2 198 280 - -
Glsi14g1561 308 MobiDBLite consensus disorder prediction 274 308 - -
Glsi14g1561 308 Gene3D Classic Zinc Finger 144 167 - -
Glsi14g1561 308 SMART c2h2final6 192 224 IPR013087 -
Glsi14g1561 308 SMART c2h2final6 229 249 IPR013087 -
Glsi14g1561 308 SMART c2h2final6 145 167 IPR013087 -
Glsi14g1561 308 SUPERFAMILY beta-beta-alpha zinc fingers 131 168 IPR036236 -
Glsi14g1561 308 MobiDBLite consensus disorder prediction 274 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1561 Glsi-ChrGlsi14 16053214 16055463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1561 9 299 C2H2 Transcription Factor Family AT1G08290 55.718 1.70e-120 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi14g1561 None None None