Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1559 ATGACAACCACATCAAGCTGTGTTTCCCTCCCAGTAAACCCAACAGTCATCTTGTTGGATAAATGCAGAACTCTGTCCCAAGTGCGTCAAATTCACTCCTATATGATCAAAACAAACCTCGTCGCTCATACTTTCTCTAGTGCTAAACTCATCTCTGTTTGCTCTCTTTCTGGTCTCTCCGGTGGACTAGACTATGCCTTGTTGGTTTTCCTTCGGATTCAAAACCCCACTTCATCCTTGTTTCGCCCTCTCATCAAGGGCTTTTCTGAAAGTTCTAATGCTTTTCAGGCTATAGTGCTTTATGCCCAGATGCTCTTTTGCTTAGATGAGTTGTGGGGAATTGAATTCTCTGTTCCCTCTGTACTCAAAGCTTGTGGCAGATCCTGTGCCTTCAGGGAAGGGCAGCAAATTCTTGGTCACATCTTGAAGACCCATCTATGGTTTGACCCGTTTGTGACGAATTCTGTGGTTCGCATGTGCCTGGATCTCGGTGAGATTGGACTTGCGAGATCAGTGTTTGATAGAATGCCTGTGAGAGACTTGATTTCTTGGAATTCCTTAATTACGGGTTACTTGAGGGCGGGTGAGATTGAGCTGGCACGTGAACTTTTTGAAAAAATGCCTGAAAGGGACTTGGTTTCATGTAATGCCATGATTGATGGGTATGCAAAGCACGGAAGGTATGAGCTTGCTGAGGAGATTTTCACAACGATGAGGGTTAGGGATGTGATTACCTGGACAACAATGATTTCAGCTTATGTTCTTAATCATCGCCCAAGAAAAGGTTTAGATTTATTCAGAGAAATGTTGAGGGTAGGAATTCGACCGGATGCCCCTGCTATTGTTAGCGTCCTTTCAGCCATTGCTGACTTGGGCTTTGTTGAGGAAGGCAAATGGATACATACTTACATATCTACCAATAAGATAGATCGTAATTATAGTTTTATTGGATCAGCACTTATAAACATGTATGCAAAATGCGGCCAAATTGAAAACGCCTACCATGTATTTAGAAGCATTTCTCACCACAGAAATATTGGAGATTGGAATTCTATGATCTCCGGGTTTGCCATTCATGGGCTTGGTCATGAAGCCATCAAAGTTTTCCTCGAGATGGAAAGGGCAGAACTCGAGCCTGACGATATCACTTTCTTGGGGCTTTTAAGTGCTTGCAACCATGGAGGTCTTGTGAATGAGGGTCAATTTTATTTTGAAACCATGCAGGTAAAGTACAAGATCATACCTAAGATTCAGCACTATGGATGCATTATTGACCTTCTTGGTAGAGCAGGTCATCTAAAAGAAGCACTAGGGATTATACATGATATGACTGTGGAGCCTGATGTTTTAATTTGGAAGGTCATTCTCAGTGCCTGCGTGAAGCATAATAACGTTGTGACGGGCCAGACTGCAGCATTGCGAGCTATAGAATTGGCTCCAGAAGATTCAAGTTGTTATGTTCTCCTCTCAAATATCTATGCCAAAGTGGGAAGGTGGGATGACGTGGCTAGAGTTAGAACAATGATGAGGAAGAGGGGAGTAAGAAAAATTCCTGGATGCAGCTCCATTCTTGTGGATGGGAAAGTTCATGAATTCCTGATTGGGAAGGGAATGGATGTGGGATCCAACCAGAACGTTCTCCCTATGATAGAAGAGATGGTCTCTAAGTTAAAATTGGAAGGATATGAGCCTGACCTCAATCAAGTTCTTGTATATACTGAAGACGATGAAAAAGAAAGGCAACTAAGTCTTCATAGTGAGAAGATGGCTCTTGCTTTTGGACTGTTGAATATTCCCCATGGCATTCCCATTCATATAGTCAAAAACTTAAGGATTTGTTGTGATTGTCACTCATTCATGCAGCTGGTTTCCAAAATCTACAACCGCAGAATAATTGTGAGAGATCAAAACCGTTTTCATCATTTTGAAAAAGGATATTGTTCTTGCAAAGATCATTGATTCTCTCTTGCCCTTCAAATTCAGATAATGGTAGTTTTTGAGACAAAAACTGTTGCTTATGACAATCTTACCCGAGAATTTGCACCTTCATCTCCATCCCTGCCTCTCCCTCAGTCAGAGCAAGAGAGCAGTCAAAATTCTATTCTCTCCCTTACGCTTGACGAGATTCAATGCAAGAGTGGGAGGATGTTTGGGTCAGTGAGCATGGATGAATTTCTAGCCAACATTTGGAGTTCCGATGATAACCAGCAGGTGGAGTCGCCACCACCGACCCATGAGGAAGCTGTTCAAAATAAAAGTATAGAAGCAACAGAGCCCACAATTTCCCAACAAGCCTCAGTCTCCGTCCCTCCTCCAATTTGCAAGAAAACTGTGGATGAAATTTGGTCTGAGATCCACAAAGACCTACCACCACAACAAAACGAAGCTAATGGCCTTAGCAACAACGGGAGTCTCAAAAAGCAGCGAACACTTGGGGAAATGACTTTGGAGGATTTCCTGATAAAAGCTGGGGTGGTACAAGAATCATCATTACCAATACCATTCAAGTCTTCGTCTCAAACGAGAACATCGTTTCCACTTCAGAATGACACTGGTAAAATGGCTAATAATAGACCATTTGATGCTAGTTGTAACACGGGGCCTGCAATGAGGGTGGGGTTTTCTACCCAACAAAATGTGGGGAGCTGTATGTCAGGAAATGGAATTGCAACATATCAAATGTTCTCGCAGAGTCATAGCCTAGCAGTAAGGGAGGCCACTACAACTAGTGCAGTTGAGAAATGCCAAAGCTTAACAGAGACAAGCGGGAATAGTAGCAAGAAGAGGATAATTGATGGCCCTCCTGAAGTGGTAGTAGAAAGGAGGCAGCGCAGGATGTTGAAGAATCGAGAATCAGCTGCACGTTCCCGAGCAAGAAGACAGGCATACACAGTGGAGTTAGAAGCAGGGCTGACTCAACTTAGACAAGAGAACGAAAAGCTGAAAGAAATTCTGGCTGAAGCTGAGCGAAAGAGAAAACAAGAGGCTGCCCAGAGAAAGCATTCAACTAAGGCTCAGAAAAGAACGGAGAAGTTTAGGGCCATAAGGAGGACAGCGAGCGTGGCTTGGTGA 3072 0.4333 MTTTSSCVSLPVNPTVILLDKCRTLSQVRQIHSYMIKTNLVAHTFSSAKLISVCSLSGLSGGLDYALLVFLRIQNPTSSLFRPLIKGFSESSNAFQAIVLYAQMLFCLDELWGIEFSVPSVLKACGRSCAFREGQQILGHILKTHLWFDPFVTNSVVRMCLDLGEIGLARSVFDRMPVRDLISWNSLITGYLRAGEIELARELFEKMPERDLVSCNAMIDGYAKHGRYELAEEIFTTMRVRDVITWTTMISAYVLNHRPRKGLDLFREMLRVGIRPDAPAIVSVLSAIADLGFVEEGKWIHTYISTNKIDRNYSFIGSALINMYAKCGQIENAYHVFRSISHHRNIGDWNSMISGFAIHGLGHEAIKVFLEMERAELEPDDITFLGLLSACNHGGLVNEGQFYFETMQVKYKIIPKIQHYGCIIDLLGRAGHLKEALGIIHDMTVEPDVLIWKVILSACVKHNNVVTGQTAALRAIELAPEDSSCYVLLSNIYAKVGRWDDVARVRTMMRKRGVRKIPGCSSILVDGKVHEFLIGKGMDVGSNQNVLPMIEEMVSKLKLEGYEPDLNQVLVYTEDDEKERQLSLHSEKMALAFGLLNIPHGIPIHIVKNLRICCDCHSFMQLVSKIYNRRIIVRDQNRFHHFEKGYCSCKDHXFSLALQIQIMVVFETKTVAYDNLTREFAPSSPSLPLPQSEQESSQNSILSLTLDEIQCKSGRMFGSVSMDEFLANIWSSDDNQQVESPPPTHEEAVQNKSIEATEPTISQQASVSVPPPICKKTVDEIWSEIHKDLPPQQNEANGLSNNGSLKKQRTLGEMTLEDFLIKAGVVQESSLPIPFKSSSQTRTSFPLQNDTGKMANNRPFDASCNTGPAMRVGFSTQQNVGSCMSGNGIATYQMFSQSHSLAVREATTTSAVEKCQSLTETSGNSSKKRIIDGPPEVVVERRQRRMLKNRESAARSRARRQAYTVELEAGLTQLRQENEKLKEILAEAERKRKQEAAQRKHSTKAQKRTEKFRAIRRTASVAW 1023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1559 1023 FunFam Pentatricopeptide repeat-containing protein, mitochondrial 317 540 - -
Glsi14g1559 1023 Pfam PPR repeat family 349 391 IPR002885 -
Glsi14g1559 1023 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 345 379 IPR002885 -
Glsi14g1559 1023 SMART brlzneu 937 1001 IPR004827 GO:0003700|GO:0006355
Glsi14g1559 1023 MobiDBLite consensus disorder prediction 731 767 - -
Glsi14g1559 1023 SUPERFAMILY Leucine zipper domain 941 989 IPR046347 GO:0003700|GO:0006355
Glsi14g1559 1023 MobiDBLite consensus disorder prediction 731 747 - -
Glsi14g1559 1023 Pfam E motif 462 523 IPR046848 -
Glsi14g1559 1023 Gene3D Tetratricopeptide repeat domain 315 516 IPR011990 GO:0005515
Glsi14g1559 1023 Gene3D Tetratricopeptide repeat domain 113 211 IPR011990 GO:0005515
Glsi14g1559 1023 Coils Coil 964 998 - -
Glsi14g1559 1023 Pfam DYW family of nucleic acid deaminases 561 652 IPR032867 GO:0008270
Glsi14g1559 1023 MobiDBLite consensus disorder prediction 753 767 - -
Glsi14g1559 1023 Pfam PPR repeat 318 339 IPR002885 -
Glsi14g1559 1023 Pfam PPR repeat 244 274 IPR002885 -
Glsi14g1559 1023 Pfam PPR repeat 213 242 IPR002885 -
Glsi14g1559 1023 Pfam PPR repeat 420 444 IPR002885 -
Glsi14g1559 1023 Pfam PPR repeat 182 211 IPR002885 -
Glsi14g1559 1023 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 944 959 IPR004827 GO:0003700|GO:0006355
Glsi14g1559 1023 NCBIfam pentatricopeptide repeat 244 278 IPR002885 -
Glsi14g1559 1023 NCBIfam pentatricopeptide repeat 182 213 IPR002885 -
Glsi14g1559 1023 NCBIfam pentatricopeptide repeat 349 380 IPR002885 -
Glsi14g1559 1023 NCBIfam pentatricopeptide repeat 213 242 IPR002885 -
Glsi14g1559 1023 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 482 516 IPR002885 -
Glsi14g1559 1023 MobiDBLite consensus disorder prediction 989 1015 - -
Glsi14g1559 1023 Gene3D Tetratricopeptide repeat domain 212 304 IPR011990 GO:0005515
Glsi14g1559 1023 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 19 590 IPR046960 GO:0003723|GO:0009451
Glsi14g1559 1023 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 939 991 IPR004827 GO:0003700|GO:0006355
Glsi14g1559 1023 Pfam bZIP transcription factor 941 992 IPR004827 GO:0003700|GO:0006355
Glsi14g1559 1023 MobiDBLite consensus disorder prediction 989 1023 - -
Glsi14g1559 1023 MobiDBLite consensus disorder prediction 837 862 - -
Glsi14g1559 1023 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 242 276 IPR002885 -
Glsi14g1559 1023 Gene3D - 939 994 - -
Glsi14g1559 1023 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 180 214 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1559 Glsi-ChrGlsi14 16025209 16030318 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1559 96 652 Glycoside Hydrolase AT3G49170 32.893 3.21e-102 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Glsi14g1559 DYW_deaminase 8.3e-31 CL0109
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi14g1559 14 16025209 16030318 Glsi14g1559 14 16025209 16030318 ECH