Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1549 ATGCCAGTCGACTGGGCTGATAATGGCGGGAAAGACCCCCAGAAATTACTTATTACAGACCGTCGAGATCGAATAGCATCAATCGAAGTGCTACTTGGTCATTTTTCGCGGAGAATGGGCGAGACAGAGAAAGTGGTGCCGGAGACGGAGGAGCTGCCGAGGGCTATAGTGCGCCGGGTGGTGAAGGATGAGCTGTCACGGTGCTCCAAAGACGGAGACATTAACGTTCACAAAGACGCTATTCTTGCTTTCTCGGAAAGCGGACGGATCTTCATCCACTACCTTTCGGCAACGGCAAATGACATTTGCAAGGAATCAAAGAGGCAGATAATAAACGCTGATGATGTATTTAAAGCTCTTGAAGAAACTGAATTCTCTGAGTTTGTCCGGCCTCTAAAAGCTTCTCTCGAAGAGTTTAGGAAGAAGAATGCTGGTAAGAAAGCGGGAGCATCAAAGGCAAAAGACGTGAAAAAGAAAAGAAAGTTGGAAGGCGACTCATCTGATAAAGGTGAGGGTGGTGACTGCAAATGA 531 0.4727 MPVDWADNGGKDPQKLLITDRRDRIASIEVLLGHFSRRMGETEKVVPETEELPRAIVRRVVKDELSRCSKDGDINVHKDAILAFSESGRIFIHYLSATANDICKESKRQIINADDVFKALEETEFSEFVRPLKASLEEFRKKNAGKKAGASKAKDVKKKRKLEGDSSDKGEGGDCK 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1549 176 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 51 120 IPR003958 -
Glsi14g1549 176 Gene3D Histone, subunit A 43 173 IPR009072 GO:0046982
Glsi14g1549 176 PANTHER DNA POLYMERASE EPSILON SUBUNIT 3 46 172 - -
Glsi14g1549 176 MobiDBLite consensus disorder prediction 143 176 - -
Glsi14g1549 176 FunFam DNA polymerase epsilon subunit 3 44 176 - -
Glsi14g1549 176 SUPERFAMILY Histone-fold 52 158 IPR009072 GO:0046982
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1549 52 155 CCAAT-HAP3 Transcription Factor Family AT4G14540 32.692 1.60e-11 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Glsi14g1549 CBFD_NFYB_HMF 1e-07 CL0012