Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1548 ATGGAAAAAGGAGTGAAAATTCATTATCAAACTCGTCCACCATTCATCTTTCTTGCTTTCTTTTGTTCTTTTGAAACCCAAGATTCCACAGAAGGGCCCAGAGCTATAGATGTCAGACCGCAAACCAAAATAGTAGTGGGTTTTGCCTTGCAACGACAATTTTTTCCAGTTGCAGAGAGCTTCTTGAGGGAGGTGCCCAGATTGTTTTATAAGATGCCACGAGGAAAGGCATATTCTTCATCAGTTGCTAAGACATCTGAACCTGAAACGCCAACTGAGTCTGATGAGAAGGTTGATTTTGACGAAGCTAATGATCCTGAGGAAACAACGGAAGTAGAAATTGAATATGAAGAGGTAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGAGATAGAAGAGGAGGTGGAAGAAGAGGAGGAAGAGGAAGAGTTTGAAGAAGTGGAAGAAGATGATACTGATCATCCTAACGAAACTGATGCCATGCAAAATATTAGTTGTGATGAAGCCAAGGTGGAAGATGAGGATGAGAAGAAAAAGCATGCCGAACTTCTTTCTCTTCCTCCTCATGGGTCTGAAGTATACATTGGTGGCATTCCTTATGATGCCTCAACCGAGGATTTGAAGGCTTTTTGTGAGTCTATTGGGGAAGTTACAGAGGTTAGGGTTATGAAAGGAAAAGATTCTTCTGAGAATAAGGGCTTTGGTTTTGTGACTTTCAGAAGTGTAGAATTGGCTTCTAAAGCCATTGATGAGCTGAATAATACAGAATTTAAGGGTAAAAAGATAAAATGTTCAACATCTCAAGCAAAACACCGTCTTTTCATTGGTAATATTCCTAGAAGCTGGGCAGAAGAGGATCTGAGGAAGGTTGTAACCGAGATTGGGCCTGGAGTTGCTGCAATAGAACTAGTCAAGGATATGAAGAACACAAACAATAATCGCGGCTTTGCTTTTATTGATTATTATAATCATGCATGTGCTGAATATTCAAGGCAAAAGATGATGAATCCAAAATTCAAGCTCGGTGACAATGCTCCAACTGTCAGCTGGGCTGACCCTAAGAATGCCGATTCCTCTGCTGCATCTCAGGTGAAGGCGGTATATGTGAAAAACTTACCTAACAATGTTACTCAAGATCAGTTAAAGAAGCTTTTTGAACATCATGGAAAGATCACAAAAGTGGTTCTGCCACCCGCAAAGTCTGGGCAAGAAAAGAACAGAATTGGTTTTGTACATTTTATGGAGAGGTCAAGTGCTATGAAAGCACTAAAAAACACCGAAAGATATGAATTAAATGGTCAAGTTTTGGAGTGCTCTCTAGCAAAGCCACAGGCTGATCAAAAGTCTGGAGGATCAAATAAACCAAAGTCAGGATTGCTTCCAAGCTATCCACCCCATCTTGGTTATGGTTTAGCTGGCAATGCCTATGGTGGGCTTGGTGTGGGATATGGTGCTGCAGGTCTTTCACAGCCCCCAATGATATATGGAAGGGGTCCAACTACTGGAATGGCCATGATGCCCATGCTTTTACCTGACGGACGAATTGGATATGTCCTGCAACAACCGGGAGTACAACCACAAACACCTCCTTCACGTCAGAGAGGTGGGATGAGTGGTGGTGTGAGTGGCAGCAAGAAAGTTGGCAGTTCAAGCCAAGGAAGGCACAACAATGATAGTGGCCAAGGACGCAGATACCGCCCATATTAG 1719 0.4235 MEKGVKIHYQTRPPFIFLAFFCSFETQDSTEGPRAIDVRPQTKIVVGFALQRQFFPVAESFLREVPRLFYKMPRGKAYSSSVAKTSEPETPTESDEKVDFDEANDPEETTEVEIEYEEVEEEEEEEEEEEEEEEIEEEVEEEEEEEEFEEVEEDDTDHPNETDAMQNISCDEAKVEDEDEKKKHAELLSLPPHGSEVYIGGIPYDASTEDLKAFCESIGEVTEVRVMKGKDSSENKGFGFVTFRSVELASKAIDELNNTEFKGKKIKCSTSQAKHRLFIGNIPRSWAEEDLRKVVTEIGPGVAAIELVKDMKNTNNNRGFAFIDYYNHACAEYSRQKMMNPKFKLGDNAPTVSWADPKNADSSAASQVKAVYVKNLPNNVTQDQLKKLFEHHGKITKVVLPPAKSGQEKNRIGFVHFMERSSAMKALKNTERYELNGQVLECSLAKPQADQKSGGSNKPKSGLLPSYPPHLGYGLAGNAYGGLGVGYGAAGLSQPPMIYGRGPTTGMAMMPMLLPDGRIGYVLQQPGVQPQTPPSRQRGGMSGGVSGSKKVGSSSQGRHNNDSGQGRRYRPY 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1548 572 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 275 357 IPR000504 GO:0003723
Glsi14g1548 572 SMART rrm2_1 196 269 IPR003954 GO:0003676
Glsi14g1548 572 SMART rrm2_1 370 443 IPR003954 GO:0003676
Glsi14g1548 572 Gene3D - 276 356 IPR012677 -
Glsi14g1548 572 MobiDBLite consensus disorder prediction 524 572 - -
Glsi14g1548 572 Gene3D - 357 464 IPR012677 -
Glsi14g1548 572 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 358 466 - -
Glsi14g1548 572 Coils Coil 109 154 - -
Glsi14g1548 572 Gene3D - 108 275 IPR012677 -
Glsi14g1548 572 CDD RRM_SF 197 269 - -
Glsi14g1548 572 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 276 356 - -
Glsi14g1548 572 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 369 447 IPR000504 GO:0003723
Glsi14g1548 572 MobiDBLite consensus disorder prediction 525 562 - -
Glsi14g1548 572 SUPERFAMILY RNA-binding domain, RBD 365 470 IPR035979 GO:0003676
Glsi14g1548 572 FunFam RNA recognition motif-containing protein 92 275 - -
Glsi14g1548 572 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 81 551 - -
Glsi14g1548 572 SMART rrm1_1 196 269 IPR000504 GO:0003723
Glsi14g1548 572 SMART rrm1_1 276 353 IPR000504 GO:0003723
Glsi14g1548 572 SMART rrm1_1 370 443 IPR000504 GO:0003723
Glsi14g1548 572 MobiDBLite consensus disorder prediction 94 159 - -
Glsi14g1548 572 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 195 273 IPR000504 GO:0003723
Glsi14g1548 572 SUPERFAMILY RNA-binding domain, RBD 192 361 IPR035979 GO:0003676
Glsi14g1548 572 MobiDBLite consensus disorder prediction 78 167 - -
Glsi14g1548 572 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 197 267 IPR000504 GO:0003723
Glsi14g1548 572 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 277 340 IPR000504 GO:0003723
Glsi14g1548 572 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 371 440 IPR000504 GO:0003723
Glsi14g1548 572 MobiDBLite consensus disorder prediction 446 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1548 Glsi-ChrGlsi14 15870257 15881930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1548 217 534 Eukaryotic Initiation Factors Gene Family AT4G34110 24.022 5.87e-11 63.5