Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1523 ATGTCGGGTACGCGAGCTCCATCCACCTCTTCTCTGCCACCGGAGCAGATCATGCACTCTATGAAACGTCAACTCCCATTTTCTTCCATGAAGCCTCCCTTTGTAGCCCCGGCAGATTATCATCGCTTCACACCCGACCATCGCCGACCTGCTGCCCAAGAAGCCGAGGCCATCTTCATTAAGTCTCCTCAATTGAAGCGGAAAAGTGACACAGCCGATTATGAAGTTGACTCTGGTGATAGGATGAACCCTGCTTCTGCTGATGCAGCTCACAGTCCTTTTCAGACACCTATATCTGGAAAGATGGGGAAGGTGAGAAAAGCCTCAAAGCTAACAAAATGCAACAGATCTGGACCTCAAACACCAGGTTCAATCATTGGTTCTCCTTCAGGCAATAATCTCACCCCAACCGGTCCGTGTCGTTATGATAGCTCTTTAGGCTTATTGACAAAGAAGTTCATCAATTTGATCAAACAAGCGGAAGATGGTATTCTTGATCTAAATAAAGCTGCCGACACCTTAGAGGTGCAAAAGAGGAGGATATATGATATAACAAATGTTCTTGAAGGGATTGGACTTATAGAAAAAAAACTCAAGAACAGAATTCAATGGAAGGGATTGGATGTTTCAAGGCCAGGGGAGGCTGATGATAGTTTTGGTAGTTTGCAGGCAGAAGTTGAAAATCTTACCTTGGAGGAGCGCCAATTAGATGAACAAATAAGGGAGACACAGGAAAGACTAAGGGGCCTTAGTGAAGATGAAAACAATCAGAAGTGGCTTTTTGTAACTGAGGAAGATATAAAGGGCTTGCCTTGCTTGCAGAATGAAACCTTAATAGCAATAAAAGCTCCACATGGCACCACTCTGGAGGTCCCTGATCCTGATGAGGCTGCTGATTACCCCCAGAGGAGATACAGGATAGTCTTGAGAAGCACAATGGGCCCGATAGATGTTTACCTTGTTAGCCAATTTGAAGAAAAGTTTGAGGAGATTAATGCTGTTGATGCGGTACCCAATCTTCCTTCCAGTCCCGAGTTTAACAAGCATCCAGCAGCAGGGGTCACGGAGGATAGAGGGAAGGACCTAGAAATACAGGGACAATATGATCATGGAACTTGTTCAGATTTTAGTGCCTCACAGGACTTTGTGAGTGGGATTATGAAGATTGTTCCTTCAGATGTTGATAGCAACGCTGATTACTGGCTTTTATCAGATGCTGATGTGAGCATAACAGACATGTGGAGAACAGAACAACCTGGAGTTGAATGGAATGAACTTGATAGGCTCAACGAAGATTATTGCATGACTCATGTGAGCCCAACACGACCCCAGACTCCTCCTTCAAACACAAGTGAAGTGCCTTCTGCTGCTAACCCTACGGGAGGTTGA 1389 0.4514 MSGTRAPSTSSLPPEQIMHSMKRQLPFSSMKPPFVAPADYHRFTPDHRRPAAQEAEAIFIKSPQLKRKSDTADYEVDSGDRMNPASADAAHSPFQTPISGKMGKVRKASKLTKCNRSGPQTPGSIIGSPSGNNLTPTGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEADDSFGSLQAEVENLTLEERQLDEQIRETQERLRGLSEDENNQKWLFVTEEDIKGLPCLQNETLIAIKAPHGTTLEVPDPDEAADYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEINAVDAVPNLPSSPEFNKHPAAGVTEDRGKDLEIQGQYDHGTCSDFSASQDFVSGIMKIVPSDVDSNADYWLLSDADVSITDMWRTEQPGVEWNELDRLNEDYCMTHVSPTRPQTPPSNTSEVPSAANPTGG 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1523 462 CDD E2F_DD 217 323 IPR032198 GO:0046983
Glsi14g1523 462 SUPERFAMILY E2F-DP heterodimerization region 220 323 IPR037241 -
Glsi14g1523 462 FunFam E2F transcription factor 1 135 208 - -
Glsi14g1523 462 Pfam E2F/DP family winged-helix DNA-binding domain 143 206 IPR003316 GO:0005667|GO:0006355
Glsi14g1523 462 SUPERFAMILY "Winged helix" DNA-binding domain 141 204 IPR036390 -
Glsi14g1523 462 Gene3D - 135 208 IPR036388 -
Glsi14g1523 462 MobiDBLite consensus disorder prediction 438 462 - -
Glsi14g1523 462 Coils Coil 219 253 - -
Glsi14g1523 462 SMART E2F_TDP_2 141 206 IPR003316 GO:0005667|GO:0006355
Glsi14g1523 462 Pfam E2F transcription factor CC-MB domain 222 322 IPR032198 GO:0046983
Glsi14g1523 462 MobiDBLite consensus disorder prediction 83 138 - -
Glsi14g1523 462 MobiDBLite consensus disorder prediction 113 138 - -
Glsi14g1523 462 Coils Coil 157 177 - -
Glsi14g1523 462 Gene3D - 214 323 - -
Glsi14g1523 462 PANTHER TRANSCRIPTION FACTOR E2F 79 419 IPR015633 GO:0000978|GO:0006357
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1523 Glsi-ChrGlsi14 15611122 15615646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1523 20 461 E2F-DP Transcription Factor Family AT5G22220 56.540 1.33e-158 455
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Glsi14g1523 E2F_CC-MB 3.2e-34 No_clan