Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1512 ATGGAAGGTAGCCAGATGAGTCTCTGCATTTTCCTCATTTGTTGCCTAATTACAGTGAGTTATGGTGCTACGGATCCAAATGATCTCAAAATCCTCAATGATTTCAAAAAAGGGTTGGAGAATCCAGAGCTTCTTGAATGGCCAGACAATGGAGATGATCCATGCGGCTCTCCCCCATGGCCCCATGTGTTCTGCTCTGGTGATAGAGTCACGCAGATCCAGGCTAAGTCTCTGGGTCTTAGAGGATCATTACCTCCAAACTTTAACCAGCTCTCAGAACTCTACAATTTGGGTCTTCAACACAACAAGCTTAGTGGGACATTGCCTACTTTCAGTGGATTATCCAAATTAGAATTCGTTTTCTTGGATTACAATGAATTTGATGCAATACCGTCTGATTTCTTTAATGGACTTACCAGTCTTCGAGTCTTGTCTTTGGAAGAGAATTCATTAAATGCTAGTACTGGGTGGTCGTTTCCTCTGGATTTAGAAAAATCAGTACAACTAACCAATCTTTCTCTGGTACATTGTAATTTGGTTGGACCAGTGCCTGATTTTCTAGGCAACTTATCATCTCTCACGAATCTGAGACTTTCGGACAACAGACTCTCTGGTGGCATTCCGGCTAGTTTTGGTCAGTCTTCAATTCAGGTTTTGTGGTTGAATGATCAAGATGGTGGCGGGATGACGGGTCCTATTGATGTTATTGCTTCAATGACTTTCCTAACACAGCTTTGGCTACATGGAAACCAATTCACTGGTACAATTCCAGATAATATTGGAAATCTAACTTCCTTGAAGGAGCTCAACCTCAACAGTAATCAACTTGTTGGCTTGGTTCCGGAATCCCTGGCCAATATGGAGCTTAAGATATTGGTGTTAAATAATAACAGGCTAATGGGTCCAATACCGAAGTTTAAGGCTGGTAACGTTTCTTATGATTTCAATTGCTTTTGTCAAACTGAGCCTGGACTTCAATGTGCCCCTGAAGTTACTGCACTTCTGGATTTCCTCGGTGATCTGAATTACCCATCAATTCTTACTTCTGAATGGTCTGGAAATGAACCATGTACAGGGCCATGGTTGGGACTGAGCTGCAATCCCAAGTCGGAGGTATCTGTAATCAATTTACCCAGACATAAGCTTAACGGTACTGTGAGTCCTTCACTAGCTAAGTTAGATTCGCTCCTTGAAATTAGGCTTGCAGGAAATAACATAACTGGCAAAGTTCCTAGTAATTTCACTGAACTGAAATCTTTGAGGCTGCTGGATTTAAGTGATAACAACCTTGAGCCTCCATTGCCAAACTTTCATGACGGTGTGAAGGTTAATACTGAGGGTAACTCTCTTCTTGTTAATCAAACTGGAAGGAGTCCCATGCCTTTAATCAGTCCACCACCTTCAAGTTCACAATCTTCACCGCACAACCCGTCATCTCCATCCTCCTATAGGCCACCTTCCCCAAGTCAGAGTTCAAGCTCAAACCCATCTAGGTTCCATTTGAATGACTCCAAAAGATTCAAGATAATAGCAATTGTGATTGGAGTTGCAATACTTGCAGTTGTAGCTCTTTTGGCTATTTTTCTATTCATATGTTGCTCGAAGAAGAAGAAAACCTCCTTATCCGCTCCTAGTTCCATTGTGGTTCACCCTAGAGACCCATATGATCCGGAAAATTTTGTTAAAATTGCAATTTCAAATAACACCGATGGAAGATTATCAACAAAGACTGGGACAAGTTCCAACATTAGTGGTGAAACTGAGAACTCTCATGTAATTGAGGATGGCAACCTTGTCATCTCTGTTCAAGTTCTGCGCAAGGTTACCAAGAATTTTTCTTCAGAAAATGAGCTAGGCCGCGGTGGGTTTGGAACTGTTTACAAGGGTGAACTTGAAGACGGAACAAAAATAGCAGTGAAGAGAATGGAGGGTGGTGCCATTAGCAGCAAAGCGCTGGAGGAGTTTCAGGCTGAAATAGCTGTACTTTCCAAGGTCCGTCACCGACATTTGGTGTCCCTGTTAGGTTATTCCATCGAAGGCAATGAAAGACTCTTGGTTTACGAATATATGCCTCTTGGCGCTCTAAGCAGGCATCTTTTTCATTGGAAAAGGCTGAAATTGAAGCCTTTGTCTTGGTCACAGAGGCTGGCAATAGCACTAGATGTTGCTAGAGGGATGGAATACCTACATGGTCTCGCCCGCCAGATCTTCATCCACCGAGACCTCAAGTCTTCTAATATTTTACTGGGTGATGATTTTCGGGCAAAAGTTTCAGATTTCGGTCTGGTGAAACTTGCCCCAGATGGTGAGAAGTCTGTTACAACTAAGCTTGCTGGAACATTTGGATACCTTGCCCCTGAATATGCAGTGATGGGGAAAATCACCACTAAAGTTGACGTGTTCAGCTACGGCGTGGTGTTGATGGAACTTCTGACTGGACTAATGGCGCTTGATGAGAACCGACCAGAGGAAAGTCGGTACTTGGCTGAATGGTTTTGGCGTATTAAATCAAGCAAAGAAAAGCTTATGGCTGCCATTGATCCAGCTCTTGAGGCAAGTGAAGAGACTTTTGAGAATATCTGCATTATAGCTGAGCTTGCTGGATATTGCACTGCGAGGGAACCGAACCATCGACCAGATATGGGCCATGCAGTCAATGTACTGGCAGCATTAGTGGAGAAATGGAGACCAATTGATGACGAATTTGATACTTTCACTGGCATTGCCTTCAGTCAACCACTTCCTCAGATGTTGAATGTCTGGATTAAGGAAGCAGAAAGTAAAGATGTTAGCTATGCAAGTCTTCAAGACAGCAATGGCAGTATACCAGCCAGGCCTACTGGGTTTGCAGAATCCTTTACTTGTGCAGATGCTCGATAA 2880 0.4313 MEGSQMSLCIFLICCLITVSYGATDPNDLKILNDFKKGLENPELLEWPDNGDDPCGSPPWPHVFCSGDRVTQIQAKSLGLRGSLPPNFNQLSELYNLGLQHNKLSGTLPTFSGLSKLEFVFLDYNEFDAIPSDFFNGLTSLRVLSLEENSLNASTGWSFPLDLEKSVQLTNLSLVHCNLVGPVPDFLGNLSSLTNLRLSDNRLSGGIPASFGQSSIQVLWLNDQDGGGMTGPIDVIASMTFLTQLWLHGNQFTGTIPDNIGNLTSLKELNLNSNQLVGLVPESLANMELKILVLNNNRLMGPIPKFKAGNVSYDFNCFCQTEPGLQCAPEVTALLDFLGDLNYPSILTSEWSGNEPCTGPWLGLSCNPKSEVSVINLPRHKLNGTVSPSLAKLDSLLEIRLAGNNITGKVPSNFTELKSLRLLDLSDNNLEPPLPNFHDGVKVNTEGNSLLVNQTGRSPMPLISPPPSSSQSSPHNPSSPSSYRPPSPSQSSSSNPSRFHLNDSKRFKIIAIVIGVAILAVVALLAIFLFICCSKKKKTSLSAPSSIVVHPRDPYDPENFVKIAISNNTDGRLSTKTGTSSNISGETENSHVIEDGNLVISVQVLRKVTKNFSSENELGRGGFGTVYKGELEDGTKIAVKRMEGGAISSKALEEFQAEIAVLSKVRHRHLVSLLGYSIEGNERLLVYEYMPLGALSRHLFHWKRLKLKPLSWSQRLAIALDVARGMEYLHGLARQIFIHRDLKSSNILLGDDFRAKVSDFGLVKLAPDGEKSVTTKLAGTFGYLAPEYAVMGKITTKVDVFSYGVVLMELLTGLMALDENRPEESRYLAEWFWRIKSSKEKLMAAIDPALEASEETFENICIIAELAGYCTAREPNHRPDMGHAVNVLAALVEKWRPIDDEFDTFTGIAFSQPLPQMLNVWIKEAESKDVSYASLQDSNGSIPARPTGFAESFTCADAR 959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1512 959 SMART LRR_typ_2 91 113 IPR003591 -
Glsi14g1512 959 SMART LRR_typ_2 190 214 IPR003591 -
Glsi14g1512 959 SMART LRR_typ_2 239 262 IPR003591 -
Glsi14g1512 959 SMART LRR_typ_2 138 161 IPR003591 -
Glsi14g1512 959 SMART LRR_typ_2 417 439 IPR003591 -
Glsi14g1512 959 SMART LRR_typ_2 114 137 IPR003591 -
Glsi14g1512 959 SMART LRR_typ_2 263 286 IPR003591 -
Glsi14g1512 959 CDD STKc_IRAK 618 888 - -
Glsi14g1512 959 FunFam receptor protein kinase TMK1 574 689 - -
Glsi14g1512 959 SUPERFAMILY Protein kinase-like (PK-like) 591 888 IPR011009 -
Glsi14g1512 959 SUPERFAMILY L domain-like 328 437 - -
Glsi14g1512 959 Pfam Protein tyrosine and serine/threonine kinase 615 885 IPR001245 GO:0004672|GO:0006468
Glsi14g1512 959 SUPERFAMILY L domain-like 24 305 - -
Glsi14g1512 959 Pfam Leucine rich repeat 242 299 IPR001611 GO:0005515
Glsi14g1512 959 SMART serkin_6 612 891 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi14g1512 959 MobiDBLite consensus disorder prediction 460 484 - -
Glsi14g1512 959 FunFam Leucine-rich repeat receptor-like kinase 329 454 - -
Glsi14g1512 959 PANTHER OSJNBA0070M12.3 PROTEIN 8 959 - -
Glsi14g1512 959 FunFam receptor protein kinase TMK1 690 907 - -
Glsi14g1512 959 ProSitePatterns Protein kinases ATP-binding region signature. 618 640 IPR017441 GO:0005524
Glsi14g1512 959 Gene3D Transferase(Phosphotransferase) domain 1 690 904 - -
Glsi14g1512 959 Pfam Leucine rich repeat N-terminal domain 26 66 IPR013210 -
Glsi14g1512 959 Pfam Leucine rich repeat N-terminal domain 329 367 IPR013210 -
Glsi14g1512 959 ProSiteProfiles Protein kinase domain profile. 612 891 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi14g1512 959 FunFam Receptor-like kinase TMK4 26 324 - -
Glsi14g1512 959 MobiDBLite consensus disorder prediction 454 498 - -
Glsi14g1512 959 Gene3D Ribonuclease Inhibitor 26 323 IPR032675 -
Glsi14g1512 959 ProSitePatterns Serine/Threonine protein kinases active-site signature. 737 749 IPR008271 GO:0004672|GO:0006468
Glsi14g1512 959 Gene3D Ribonuclease Inhibitor 329 455 IPR032675 -
Glsi14g1512 959 Gene3D Phosphorylase Kinase; domain 1 574 689 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1512 Glsi-ChrGlsi14 15555411 15558933 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1512 82 893 Receptor kinase-like Gene Family AT5G07280 31.496 4.70e-82 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Glsi14g1512 PK_Tyr_Ser-Thr 1.4e-45 CL0016