Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1499 ATGGCTGAAATTGGAACTCTTGAATATTTCGTTTGTCCCATTTCCTTTGAGATCATGAAGGACCCCGTGACCACCATCACAGGTATAACGTACGACAGAGAAAGCATCGAGCAGTGGTTGCTGACGACCAAACACTGTAGATGCCCTGTTACCAATCAGCCATTGCCAAGAGATTCTGATTTAACGCCCAACCACACTCTTCTCAGGCTCATCCAGGCATGGTGCTCAGCTAACGGCGTTGATCGCATTCCAACCCCGAACTCCCCACTCAACAACACCCATCTTCACAAACTTATCACTGATCTCCACCTTCCTCATTTGTATCAAACCGCATTGGAAAAAATGCATGCTCTGGCCATAGACAGCGAAAGGAACAGAAGATGCATGGCGGAAGCAGGAGTAGCCAAAGCTATGGTTCCTATAATTACCAAGAGTTTGAAAGAAGGTGAAACCGCGAGCCTCGAACTAGGTTTGAGAATTCTTCGCGTACTCGGGGATCCAGCCATGGCAGACATGAAGCCACTGGTTTGTAAAAACTTAGACTTTATCAGCACTTTGACTTGGATTTTGCAACTTCACATGGATAACAAAGTCAAGATAGTAAATGAAGCAATGTCCGTTTTGAAATCAACAATTGACGTTGCAGATTCAACACTTTTAGGAAGTTTAAAGCTTGAATTCTTCAGAGAAATAACAAGGGTGCTGAGAAACAGAGCAGTGTCTGAGCAAGCTATCAAATCTGCCTTGCAAGTGCTTATAGAAACGTGCCCATTGGGCAGAAATCGATTGAAAATCGTAGAAGCAAACGCAGTGTTTGAACTCATCGAGCTTGAACTAGAGAAACCCGAAAAGAACATTAGCGAGCTCATATTTAACCTTCTAGCACATCTATGTTGTTGTGCTGAAGGGAGAGAACAGTTTGTACAACACTCAGCGGGCATTGCGGTTCTTTCTAAAAGGATTCTAAGGGTTTCCCATGCAACTGATGACCGAGCGCTTCATGTATTATCCCTGATAGCTAAGTACACAGGATCAAATGACGTGGTTTTAGAGATGTTGAGGGTGGGGGCAGTGTCAAAGCTTTGCATGGTGATGCAAGCGGATTGTGATTCATCTTTGAAAGAAAAAGCAAGAGGTATCCTTAGGTTACACTCCAAAACTTGGAACAATTCTCCTTGTATTCAAGTTTATTTGCTAACCAGGCACCAAAGGTGA 1215 0.437 MAEIGTLEYFVCPISFEIMKDPVTTITGITYDRESIEQWLLTTKHCRCPVTNQPLPRDSDLTPNHTLLRLIQAWCSANGVDRIPTPNSPLNNTHLHKLITDLHLPHLYQTALEKMHALAIDSERNRRCMAEAGVAKAMVPIITKSLKEGETASLELGLRILRVLGDPAMADMKPLVCKNLDFISTLTWILQLHMDNKVKIVNEAMSVLKSTIDVADSTLLGSLKLEFFREITRVLRNRAVSEQAIKSALQVLIETCPLGRNRLKIVEANAVFELIELELEKPEKNISELIFNLLAHLCCCAEGREQFVQHSAGIAVLSKRILRVSHATDDRALHVLSLIAKYTGSNDVVLEMLRVGAVSKLCMVMQADCDSSLKEKARGILRLHSKTWNNSPCIQVYLLTRHQR 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1499 404 SUPERFAMILY ARM repeat 109 382 IPR016024 -
Glsi14g1499 404 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Glsi14g1499 404 Gene3D - 93 396 IPR011989 -
Glsi14g1499 404 Pfam U-box domain 8 78 IPR003613 GO:0004842|GO:0016567
Glsi14g1499 404 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Glsi14g1499 404 CDD RING-Ubox_WDSUB1-like 8 64 - -
Glsi14g1499 404 SUPERFAMILY RING/U-box 6 83 - -
Glsi14g1499 404 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 82 IPR013083 -
Glsi14g1499 404 PANTHER WDSAM1 PROTEIN 8 395 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1499 Glsi-ChrGlsi14 15444912 15446126 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1499 3 401 U-box Gene Family AT3G11840 40.444 1.71e-94 289