Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1498 ATGGATGAAATTGAAGTTCCTCCCCATTTTCTCTGCCCCATTTCCTTGCAGCTCATGAGAGATCCTGTCACGGTGTGCACCGGAATCACCTACGATAGAGAAAACATTGAGAGATGGCTATTTTCGTGCAAGAACGAAACCTGCCCTGTTACTAAGCAATCACTCTTGGACACAGATCTTACCCCAAACCACACTCTTCGACGTTTGATCCAAGCTTGGTGCACCCTTAATGCCTCACTTGGAATTGAGCGTATTCCAACTCCAAAGCCACCCCTTGACAAAACCCAGATCCTCAAGCTTATCTCTGAAGCAAAGAGGTTCCCGCATAAGCAGCTCAAATGCCTTAGAAGGCTTCGATCTATTGCTTTTGAAAGTGAAAGCAACAAAAAATGTTTGGAGTCTGCTGGAGCAATTGAATTCTTGGCTTCAACCATCAAGTTTAGTGAAGTCTCAACGGTTCTGAGTGAAGCAGCTATTGAAGTTTTGTTTCATCTAAATCCATCGGAAAATCAGATTAAGAATCTGGTAAACAACGAGGACATTCAATTTATTGAGTCCTTGATCCAAATCTTGAGGCTTGGGAACTACCAATCTCGAGCTTATGCAACTATAATATTGAAGTCAGCGTTTGAAGTGGCTGATCCAACCCAATTGAGCAGTGTGAAAATAGAACTGTTTGTGGAATTAACGCGAGTTCTGCGCCATCAGATATCACAGCAGGCTTCTAAGGCTGCGTTGAAGCTTCTTGTAGAGTTGAGTCCATGGGGTAAAAACCGAATCAAAGCGGTTGAGGGTGGGGTGGTTTTAGTGCTCATAGACCTACTTCTTGATGCATATGAAAGAAGAGCATGCGAGCTAATGCTGATAGCTTTGGATCAGCTGTGTGGTTGTGCGGAAGGGCGAGCAGAGTTGCTGAAGCATGGGGCAGGAGTGGCCATTGTGTCCAAGAAAATTCTAAGGTTATCTCATGTGGCAAGTGATAGAGGGGTTAAAATATTAACCAACATTTGTAGGTATTCAGCAACTTCTAGAGTGCTTCAAGAAATGTTGCAAGTTGGGGTTGTGTCCAAGTTATGTTTGGTGCTTCAACTGGATGGAAGTTTGAAGACAAAGGAGAGGGCCAAAGAGATACTCAAATTGCACTCTAGAATTTGGAAGAATTCCCCATGTATTCCTCTTCCTCTGCTCTCATCCTATCCTTGA 1203 0.4364 MDEIEVPPHFLCPISLQLMRDPVTVCTGITYDRENIERWLFSCKNETCPVTKQSLLDTDLTPNHTLRRLIQAWCTLNASLGIERIPTPKPPLDKTQILKLISEAKRFPHKQLKCLRRLRSIAFESESNKKCLESAGAIEFLASTIKFSEVSTVLSEAAIEVLFHLNPSENQIKNLVNNEDIQFIESLIQILRLGNYQSRAYATIILKSAFEVADPTQLSSVKIELFVELTRVLRHQISQQASKAALKLLVELSPWGKNRIKAVEGGVVLVLIDLLLDAYERRACELMLIALDQLCGCAEGRAELLKHGAGVAIVSKKILRLSHVASDRGVKILTNICRYSATSRVLQEMLQVGVVSKLCLVLQLDGSLKTKERAKEILKLHSRIWKNSPCIPLPLLSSYP 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1498 400 PANTHER WDSAM1 PROTEIN 3 392 IPR045185 GO:0061630
Glsi14g1498 400 SUPERFAMILY RING/U-box 3 77 - -
Glsi14g1498 400 ProSiteProfiles U-box domain profile. 5 80 IPR003613 GO:0004842|GO:0016567
Glsi14g1498 400 CDD RING-Ubox_PUB 7 60 IPR045210 -
Glsi14g1498 400 SMART Ubox_2 9 73 IPR003613 GO:0004842|GO:0016567
Glsi14g1498 400 FunFam RING-type E3 ubiquitin transferase 1 83 - -
Glsi14g1498 400 SUPERFAMILY ARM repeat 109 377 IPR016024 -
Glsi14g1498 400 Pfam U-box domain 6 75 IPR003613 GO:0004842|GO:0016567
Glsi14g1498 400 Gene3D - 98 220 IPR011989 -
Glsi14g1498 400 Gene3D - 221 380 IPR011989 -
Glsi14g1498 400 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 81 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1498 Glsi-ChrGlsi14 15437835 15439037 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1498 2 400 U-box Gene Family AT2G35930 54.591 3.31e-161 457