LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi14g1475	ATGGCCAGAGGGGTTGGACTCTCCATTGATACAGATCCACCTGGGAGCTTCTTCCCCCACAGCCCTATTGTTCTCAATTCTTTTCCTGAAGACAACAACCATCCCAAGTGGAAACGTAGTCCCAATATGGATGGCACCAAGAGGTCTTCACCCAGTACCATCCCCTTCCAGGTCAACCTCAACTGTGCCCAAGATCATAATCAAGACTCTCCCGCACCCTCTGATGAACGAAGAACCCCCGTCGATGAGATGGACTTCTTCTCTGATAACAAGAACAAGGATGACAAGCTTGCTTCCGCCTCTGCCTCTGTCATTGCTCCTGATAAACTTGATCATTCCATTTCCACCACTCCGCCTATCTTACAATTCAAAGTAAACACTGGTCTGAATCTTCTTACTACCAACTTCAGCAGCGACCATTCCATGGTGGACGATGGCATCTCGCCTAATTCAGAAGATAAAAGAACCAAGAGTGAGCTGGCTGTTCTTCAGGCCGAGCTTCAACGAATGAAGGGGGAAAATCATCGCTTAAGGGACATGCTGGATCAGGTTAATACGAATTACAACGCCCTGCATATGCATTTTTCGACTTTGATGCAGCGGCAGAAGACGGAGGAAGCTGAAGAACAGCACGTGTTTGATGGGAAAGAAGAAGAAAAGAAACAAAAAGGGAATGAGGGATTGTTAGTGCCTAGGCAGTTTATGGATCTTGGGCTTGCTACTAACGCTGATACCGATGAGCCTTCGCTTTCTTCATCAGTGGGAAGAAGTGGGGGGGATCGGTCAGGGTCACCGGGAAATAACGTGGAAGTGGCTTCCAAGGAATTTGGCACCAGAAAGAATGGAATCAGCGCTGATGATGGGCCTGTGCTTGAACAAGATAAGAAGGAATTTGTTAGGGGAATTGAGAGAGAGGATAGCCCCCAAGGTCAAGCTTTCGCTGCTAACAAGATTCCAAGATTCAGTCCTCCAGAAAATATTGATCAAGCGGAGGCCACCATGAGGAAGGCCAGAGTTTCAGTTAGAGCTCGATCAGAGGCACCCATGATAACCGATGGGTGTCAATGGCGAAAGTACGGGCAGAAGATGGCCAAAGGAAACCCTTGTCCTCGAGCTTATTACCGCTGCACAATGGCTGCTGGTTGCCCAGTTAGAAAACAGGTACAAAGATGTGCTGAGGACCGAACAATCCTGATCACAACATACGAAGGCAATCACAACCACCCTTTGCCTCCAGCAGCGATGGCAATGGCACAAACAACTTCATCAGCTGCAAGAATGCTGCTTTCGGGATCAATGTCGAGCACTGATGGCTTAATGAATGCAAATTTCCTGACAAGGACACTGCTTCCTTGTTCTTCTAGCATGGCAACTATCTCAGCCTCAGCTCCATTCCCAACTGTTACATTGGACCTGACCCAATCCCCAAACCCTTTACAGTTTCCAAGGCCACCAAGTCAATTTCAAATCCCCTTCCCAGCCGGTGTCCCTCAGGGCCTCGCCAATTCCCCAGCCTCGTTGCTGCCTCAAATATTTGGTCAGGCCCTGTATAACCAATCAAAGTTTTCTGGGCTTCAAATGTCTCAAGATGCAGATCCTTCACAACTGCAGGCACAACCTCAACTGGCTGACACACTTAACGCAGCCACTGCAGCCATTGCAGCTGACCCCAACTTCACTGCGGCTTTGGCAGCAGCTATCACTTCCATTATTGGTGGTGCTCGGCCAAACAACAATAATAGCAATAATGGCAACCTCACGGCTACCAATATTACAACTAGCAACAACAATAATAGCAACGGAAGCAATAAAATGAGCCCTTCCAATTTCTCAGGGAATTAA	1842	0.4805	MARGVGLSIDTDPPGSFFPHSPIVLNSFPEDNNHPKWKRSPNMDGTKRSSPSTIPFQVNLNCAQDHNQDSPAPSDERRTPVDEMDFFSDNKNKDDKLASASASVIAPDKLDHSISTTPPILQFKVNTGLNLLTTNFSSDHSMVDDGISPNSEDKRTKSELAVLQAELQRMKGENHRLRDMLDQVNTNYNALHMHFSTLMQRQKTEEAEEQHVFDGKEEEKKQKGNEGLLVPRQFMDLGLATNADTDEPSLSSSVGRSGGDRSGSPGNNVEVASKEFGTRKNGISADDGPVLEQDKKEFVRGIEREDSPQGQAFAANKIPRFSPPENIDQAEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPAAMAMAQTTSSAARMLLSGSMSSTDGLMNANFLTRTLLPCSSSMATISASAPFPTVTLDLTQSPNPLQFPRPPSQFQIPFPAGVPQGLANSPASLLPQIFGQALYNQSKFSGLQMSQDADPSQLQAQPQLADTLNAATAAIAADPNFTAALAAAITSIIGGARPNNNNSNNGNLTATNITTSNNNNSNGSNKMSPSNFSGN	613

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi14g1475	613	MobiDBLite	consensus disorder prediction	201	229	-	-
	Glsi14g1475	613	MobiDBLite	consensus disorder prediction	241	291	-	-
	Glsi14g1475	613	SMART	WRKY_cls	350	410	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Glsi14g1475	613	MobiDBLite	consensus disorder prediction	1	93	-	-
	Glsi14g1475	613	Gene3D	WRKY domain	335	412	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Glsi14g1475	613	MobiDBLite	consensus disorder prediction	44	69	-	-
	Glsi14g1475	613	Pfam	WRKY DNA -binding domain	352	409	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Glsi14g1475	613	MobiDBLite	consensus disorder prediction	70	93	-	-
	Glsi14g1475	613	MobiDBLite	consensus disorder prediction	573	613	-	-
	Glsi14g1475	613	PANTHER	WRKY TRANSCRIPTION FACTOR 36-RELATED	136	590	IPR044810	GO:0003700
	Glsi14g1475	613	SUPERFAMILY	WRKY DNA-binding domain	343	411	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Glsi14g1475	613	FunFam	probable WRKY transcription factor 31	335	412	-	-
	Glsi14g1475	613	ProSiteProfiles	WRKY domain profile.	345	411	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Glsi14g1475	613	Coils	Coil	153	187	-	-
	Glsi14g1475	613	MobiDBLite	consensus disorder prediction	201	226	-	-
	Glsi14g1475	613	MobiDBLite	consensus disorder prediction	244	271	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi14g1475	Glsi-ChrGlsi14	15232819	15235099	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi14g1475	52	585	WRKY Transcription Factor Family	AT1G62300	48.358	1.81e-136	407

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Glsi14g1475		WRKY	3.3e-24	CL0274

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Glsi14g1475	14	15232819	15235099	Glsi04g0600	04	4148230	4150338	CCT
	Glsi14g1475	14	15232819	15235099	Glsi14g1475	14	15232819	15235099	ECH