Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1474 ATGAACTGGAGTAGAGGCAGCATCATAGGCCATGGCTCATCGGCCACCGTCTCCCTCGCCACCTCTCCCCAGTCCGGCGACGTCTTCGCCGTCAAGTCAGCGGATCTATCTCGTTCAGAGTTGTTACAGAAAGAGCAGAGAATTCTATCTTCTTTATGTTCTCCTTATATAGTTAGCTATAAAGGGAGTGACATTACTAGGGAGAAAAACAGAGTTTTGTTCAATATTTTCTTGGAGTATATGCCTTTTGGCACGCTTATTGAAGTAACTCACCGGCACGGTGGCCGGCTTGACGAGTCGGTGATCGCCTACTACACCCGGCAAGTTGTGCAGGGGTTAGAGCATTTACATACAAATGGGTTGGTACATTGTGACATTAAGGGTACCAATATCTTGATTGGTGAAGATGGAGCTAAAATTGCTGACTTTGGATGTGCTAAAAGTGTGATTCAGCCGGCGCCAATTAGCGGCACGCCGATGTTTATGGCACCAGAGGTGGCGCGTGGGGAAGAACAGGGGTATCCTTGTGACATATGGGCACTTGGGTGTACTCTGATTGAAATGGCTACTGCGGTTTCACCCTGGCCTAATGTGGCAGACCCTGTGTCAATTCTTTACCATATTGCATATTCCGGTGAATTGCCTGAGATTCCAGGTTTTCTATCGGAGCAAGCAAAGGATTTCTTGGGGAAGTGCTTGGGGAGGAATCCAAAAGAGAGATGGACGGCCAGTCAACTCCTGAAGCATCCATTTCTTGGGGAATTCAATTCCAATGCTAAGCAAATCCAAGAATATATTACAAGTTCCCCAACAAGTATTCTTGAGCAAGGCTTTTGGAGTTCTGAGGAAGAATCGGAAAGTCTTGGCAATTTGATTCAGACAAGTTTCGAAAATTCGCCTGCTGGTAGGATCAGAAAGTTAGCTTTGTGTCCGGGGGAACCCAATTGGACAGAAGATGAGGAGTGGATCACAACTAGAGGGAATGAAGCAGGAGAAAAAGTTGAAGCTTCTGGCATTTGTGGGTCAGGGATACCCTCAACTAGTGATGATTTGCAAGAGTTGGAGAAAAGCAATGTCAGTAGTAGAATTAGTGGCTATTTTAGTGAGGATTACAAATGTAGGGATGTTAGTGTTATAACTTGTAGTGTCAATTTTGAGAGAGGCATTGATAAGATGCTACTCCCTTCAATATCAATTTTTTTATAA 1206 0.4486 MNWSRGSIIGHGSSATVSLATSPQSGDVFAVKSADLSRSELLQKEQRILSSLCSPYIVSYKGSDITREKNRVLFNIFLEYMPFGTLIEVTHRHGGRLDESVIAYYTRQVVQGLEHLHTNGLVHCDIKGTNILIGEDGAKIADFGCAKSVIQPAPISGTPMFMAPEVARGEEQGYPCDIWALGCTLIEMATAVSPWPNVADPVSILYHIAYSGELPEIPGFLSEQAKDFLGKCLGRNPKERWTASQLLKHPFLGEFNSNAKQIQEYITSSPTSILEQGFWSSEEESESLGNLIQTSFENSPAGRIRKLALCPGEPNWTEDEEWITTRGNEAGEKVEASGICGSGIPSTSDDLQELEKSNVSSRISGYFSEDYKCRDVSVITCSVNFERGIDKMLLPSISIFL 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1474 401 CDD STKc_MAPKKK 2 252 - -
Glsi14g1474 401 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Glsi14g1474 401 ProSiteProfiles Protein kinase domain profile. 3 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi14g1474 401 SMART serkin_6 3 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi14g1474 401 SUPERFAMILY Protein kinase-like (PK-like) 2 292 IPR011009 -
Glsi14g1474 401 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 284 - -
Glsi14g1474 401 Gene3D Transferase(Phosphotransferase) domain 1 2 305 - -
Glsi14g1474 401 Pfam Protein kinase domain 5 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi14g1474 401 FunFam Mitogen-activated protein kinase kinase kinase 17 2 303 - -
Glsi14g1474 401 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1474 Glsi-ChrGlsi14 15224699 15225904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1474 1 328 MAP Kinase Kinase Kinase AT1G05100 51.020 3.33e-113 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Glsi14g1474 Pkinase 2.5e-51 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi14g1474 14 15224699 15225904 Glsi04g0602 04 4156609 4161813 CCT
Glsi14g1474 14 15224699 15225904 Glsi14g1474 14 15224699 15225904 ECH