Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1416 ATGGACATCGACTTCTCATACTCCTCCAATTGGCTCTACGATTATGCCTTTGATATCCCTCTTGCCGGAGCTGACTTCCCGGCCACAGCCTCCGGTGCTTTCGACTGGGTCTCTCGTTCTTCCGATATGAGCTTGGACGTGGAATACTCACTGGGAAGTTCAACTTTCCTGGGAAATGGCCCTCCAAAAAGGCTGAAGTCTGAATCAAGTTCATCCGGCTCCAAGGCATGTCGTGAGAAATTGCGGAGGGATAGACTGAATGAGAGGTTACTGGAATTGAGTTCTATCTTGGAGCCTGGTAAGGTGCCCAAAACAGATAAGGCTGCTATATTAAGCGATGCAGCTCGAATGGTAACCGAATTAAAAAGTGAAGCCCAGAAGCTGAAGGAAACAAATGATGAATTGCTTGTAAAGATTAAGGAATTGAAGGCTGAGAAGAATGAGCTTCGCGATGAGAAGAATAGGCTGAAGATGGATAAAGAAAAGCTGGAGCAACAGGTCAAAGCAATGAATGCACAGCCAACCTATCTTCCTCATCCCTCTGCTGCATTTACTGCCCAAGGCAAAACTGCCAGTCACAAGCTGATACCTTATATTGGTTACCCTGGAATCGCCATGTGGCAATTTATGCCACCTGCTGCGGTTGATACATCACAGGATCATCTACTTCGCCCTCCTGTTGCTTAA 687 0.4672 MDIDFSYSSNWLYDYAFDIPLAGADFPATASGAFDWVSRSSDMSLDVEYSLGSSTFLGNGPPKRLKSESSSSGSKACREKLRRDRLNERLLELSSILEPGKVPKTDKAAILSDAARMVTELKSEAQKLKETNDELLVKIKELKAEKNELRDEKNRLKMDKEKLEQQVKAMNAQPTYLPHPSAAFTAQGKTASHKLIPYIGYPGIAMWQFMPPAAVDTSQDHLLRPPVA 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1416 228 Gene3D arf6 gtpase in complex with a specific effector, jip4 120 174 - -
Glsi14g1416 228 Gene3D - 64 119 IPR036638 GO:0046983
Glsi14g1416 228 Pfam Helix-loop-helix DNA-binding domain 74 121 IPR011598 GO:0046983
Glsi14g1416 228 CDD bHLH_AtILR3_like 75 150 - -
Glsi14g1416 228 PANTHER BHLH TRANSCRIPTION FACTOR 8 228 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Glsi14g1416 228 Coils Coil 111 173 - -
Glsi14g1416 228 SMART finulus 76 127 IPR011598 GO:0046983
Glsi14g1416 228 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 70 121 IPR011598 GO:0046983
Glsi14g1416 228 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 76 146 IPR036638 GO:0046983
Glsi14g1416 228 MobiDBLite consensus disorder prediction 60 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1416 Glsi-ChrGlsi14 14764080 14767331 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1416 8 228 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 57.021 3.90e-80 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi14g1416 HLH 3.1e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi14g1416 14 14764080 14767331 Glsi14g1416 14 14764080 14767331 ECH