Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1379 ATGGGAAGAGCACCTTGCTGTGACAATAATGGACTCAACAAGGGTCCATGGACACCAGACGAAGATCTTAAGCTCATCAACTACATTCAGACACATGGACCGGGCAATTGGCGAACCCTCCCCAAGAATGCTGGTCTTCAAAGATGTGGCAAGAGTTGCCGTCTTCGGTGGACAAATTACCTGAGACCCGATATCAAGAGAGGACGATTCTCTTTTGAAGAAGAAGAGACCATTATTCAGCTGCACAGTGTCATGGGTAACAAATGGTCAGCTATAGCAGCCCGCCTGCCGGGAAGAACTGACAATGAAATAAAGAATTACTGGAACACCCGCATTAGGAAGAGGCTGCATCGAATGGGAATTGATCCAGTCACTCATGCCCCGCGCCTTGATCTACCTGCCATATCCTCTATTCTAAGGTCAGCATTGACCAACCCATCGCTTCTGAATCTTCAAGGCTTATTGGGCGCCCAAGCATTGATGAACCCGGAAGTGTTAAAGCTGGCCAGCACCCTGTTATCGTTGAGGAATGAAAACCCAGATTTGCTTTCACCGAATCTACAACAAACCCCAACTGGAAATTATCAAGTAGAAAGCCAAGTTGAGCCACAACTGCCAATTAGTCAGTTTCAGATGCCAACTCAAACTACCAATGTGGAAAACTTCTCGGGCAATATGACAAACTTGAGCTGTTCAAGTTCTCCAGAAAATTCATTTCCTTCCTATCTGGGCCAGAATCTTATCCCGCAACAAAACCAAGTGGATTTGCAACGAAACCCAACATTAGTGCAGTGTCTAAACAGTGAAAACGTCCAACACATAGGTTATGAGTCAGTTCTATCAACACCTTTATCGAGCCCAACTCCATTGAATTTATCACCGACGTATGTGAATAGCAGCGCCGACGAGGAAAAAGATAGCCATTGTAGCGACTTATTCAAGTTCGAAATTCCAGAGAGTCTGGACATTAGTGACTTCTTGCTAATAAGGAAGTTCACTGCAGAATACAGAATATTTTTTGTCGAAGTTTACATTTTACCTGGGCTTCGTTTTCCATCACGAGCCAAATTGCTCGCATTGAAATTTCAAAGTTCCAGGTCTTCTGGGAGGCGAGGGCTAAAACCTAGCAACTCACACCCCTCTTTCTCTTCCTCCAACTTCATTGAGGTGCCAATGAACGAGACACATTTGATCGGAATTGGAGGAGGATTTGCTTGCGTGACTCTTTTGGTCCCAACCCAAGACCCAGAGGAACCAGTTATTGATGGCAGAGAAAGAGCTCCACCAGTACCACCAGCATGCAGCGACAGGAACGGGGTAAAGCTGCGCAAGGCAGCCATATACGATTCGCTGACAAAGATTCAACCTTATAGAACTCCGTCGTCCTACTCTCTCCGCGCTAGACTGCTAGTGCACTACAACAAATCTCACCCTGTAAAAAGAATGCAATCATTTACGTCCATTCTCGCGTTCCACGTTTTCTTCACGTCAATATTAACACTTTCCCTTGCTGGTCTACTCTCCGAACCAGTGACTAATCCCAACCACGATGGGTCGTCATCGCCCAACAATGGCCCAACATTTCCGATTCAAAACCAGAGCCAAACTTGCCGGCTCGACCTCTCTAAAGAGTTATTCGGCGGCGTCAACGACGCTTGTGGCAAGGACCTGGACCGCAGCCGGTGCTGTCCGGTCCTCGAGGCCTGGCTCTTCGCCGCACACGCCAGGTCGGCTCTGGAGGTTTCAGCTTCGACTCCTGCAGCAAGTGGTGATCTTCCGATGATGCCGGACGACTCACAAAAGTGTGTGAACGCGCTTCAAGAGTCGCTATTGAGTCGGAACATTCGGATTCCACAGCCCAATGCGAGCTGTGACGCTATACTGTGCTTCTGCGGGATTAGGCTTCACCAGATCACCTCCCTGAGCTGCCCTGCTGCGTTTAATGTCTCTGGTTCCCATAATGCCACCCCAACTGCGGCCGTTATAAACTTGGAGAAGAATTGCCGTAATTCTTCATACGCAGGTTGCACCAAATGCCTTGAAGCCCTACATAAGCTAAAAGGATACAAGAACGGAAGCAGGGAGGACGGAGGAAATGAGAGGGCAAACAAGATGTTCAACCAGGACTGCCAACTCATGGGTCTGACGTGGTTGCTAGCGAGGAACAAAACGGCATACATACCGACCGTTTCGGCGGTGTTGCGCGCCATCATGTACAGCGCGCACCCACACCAATCCAAGTGTAGCCCCGACCAGGAGAACATGCCCTTGGCCGTTGATTCGCTACAGTTTGAGAATGCCCAGGCGTCATCGTCGTCGTTGACATCTTGGATCACGCTTCTGCCCCTAATCATTCTGATTTCTCCTTTTGTATAG 2376 0.4857 MGRAPCCDNNGLNKGPWTPDEDLKLINYIQTHGPGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSVMGNKWSAIAARLPGRTDNEIKNYWNTRIRKRLHRMGIDPVTHAPRLDLPAISSILRSALTNPSLLNLQGLLGAQALMNPEVLKLASTLLSLRNENPDLLSPNLQQTPTGNYQVESQVEPQLPISQFQMPTQTTNVENFSGNMTNLSCSSSPENSFPSYLGQNLIPQQNQVDLQRNPTLVQCLNSENVQHIGYESVLSTPLSSPTPLNLSPTYVNSSADEEKDSHCSDLFKFEIPESLDISDFLLIRKFTAEYRIFFVEVYILPGLRFPSRAKLLALKFQSSRSSGRRGLKPSNSHPSFSSSNFIEVPMNETHLIGIGGGFACVTLLVPTQDPEEPVIDGRERAPPVPPACSDRNGVKLRKAAIYDSLTKIQPYRTPSSYSLRARLLVHYNKSHPVKRMQSFTSILAFHVFFTSILTLSLAGLLSEPVTNPNHDGSSSPNNGPTFPIQNQSQTCRLDLSKELFGGVNDACGKDLDRSRCCPVLEAWLFAAHARSALEVSASTPAASGDLPMMPDDSQKCVNALQESLLSRNIRIPQPNASCDAILCFCGIRLHQITSLSCPAAFNVSGSHNATPTAAVINLEKNCRNSSYAGCTKCLEALHKLKGYKNGSREDGGNERANKMFNQDCQLMGLTWLLARNKTAYIPTVSAVLRAIMYSAHPHQSKCSPDQENMPLAVDSLQFENAQASSSSLTSWITLLPLIILISPFV 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1379 791 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Glsi14g1379 791 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Glsi14g1379 791 CDD SANT 16 61 IPR001005 -
Glsi14g1379 791 SMART sant 66 114 IPR001005 -
Glsi14g1379 791 SMART sant 13 63 IPR001005 -
Glsi14g1379 791 CDD SANT 69 110 IPR001005 -
Glsi14g1379 791 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Glsi14g1379 791 FunFam MYB transcription factor 68 129 - -
Glsi14g1379 791 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Glsi14g1379 791 Gene3D - 69 116 - -
Glsi14g1379 791 FunFam MYB-related transcription factor 13 66 - -
Glsi14g1379 791 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Glsi14g1379 791 PANTHER GPI-ANCHORED PROTEIN 486 784 IPR040376 -
Glsi14g1379 791 Gene3D - 14 66 - -
Glsi14g1379 791 Pfam SPARK 532 696 IPR043891 -
Glsi14g1379 791 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Glsi14g1379 791 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1379 Glsi-ChrGlsi14 14536591 14541784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1379 1 328 MYB Transcription Factor Family AT4G21440 49.319 7.78e-96 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi14g1379 SPARK 5.1e-16 No_clan