Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1325 ATGGATGACGAGGTCAAAATAAGTTATATAAGAAACCCAAAGCCCCTCCTTTGCCTTCACGTTAACGGTCTCATCCCAAAAGCCTCTGCCACCATCACACTGTCGGCAAGGCTACCTTTCACTGTTCCAAACTGTTTTCTCGGGTTCTGCGCTCAACGCAGCTCAGTTTTAGCGGTGGCGCGCTCCCTTTATCACACAATGCAGCACCACCGTGGCTCCGCCGTGTTTTTGAGCTTCTGCTTTTACTTCGCTTCGAAAGCTTTGCTGGTATGCGCGCAGGGCCAGCTTCAGCACCGGGTCCCAGTGGCCGACCCACATTGGTATCCGGGCACCGCTACCTGGTACGGTGACCCCGAAGGTGATGGTAGCACCGGGGGGGCATGTGGGTACGGTACCTTAGTGGACGTGAAGCCATTGAGGGCACGAGTAGGGGCTGTAGGGCCGGTACTGTTCAAGAACGGAGAAGGGTGTGGGGCATGCTACAAGGTGAAGTGCTTGGACGAGAGCATATGCTCGAGGCGAGCCGTGACGGTTATAATAACGGACGAGTGTCCAGGATGCCCCTCCGACCGAACCCACTTCGACCTTAGTGGCGCGGCCTTTGGGCACATGGCTATAGCTGGCGACAATGGTCATCTCAGGGATAGAGGCCAAATCCCCGTCATTTACCGAAGAACACCATGCAAATATCCAGGCAGAAACATTGCCTTCCATGTTAATGAAGGTTCCACGCCTTTTTGGCTATCACTTTTGGTGGAGTTTGAGGATGGAGAAGGAGACATCGGTTCCATGCATATCCAAGAAGCAGGGTCTATCGAGTGGTTACAGATGAATCATCTATGGGGTGCAAATTGGTGCATTATTGGTGGACCTTTGAGGGGACCGTTTTCAGTGAAACTAAGCACATCCACTGGGAGATCCCTGTCAGCCAGAGATGTTATTCCAGGCAGTTGGTCTCCAAAAGCCACTTACACCTCTCGCCTAAATTTCTCCCCTTAG 999 0.5285 MDDEVKISYIRNPKPLLCLHVNGLIPKASATITLSARLPFTVPNCFLGFCAQRSSVLAVARSLYHTMQHHRGSAVFLSFCFYFASKALLVCAQGQLQHRVPVADPHWYPGTATWYGDPEGDGSTGGACGYGTLVDVKPLRARVGAVGPVLFKNGEGCGACYKVKCLDESICSRRAVTVIITDECPGCPSDRTHFDLSGAAFGHMAIAGDNGHLRDRGQIPVIYRRTPCKYPGRNIAFHVNEGSTPFWLSLLVEFEDGEGDIGSMHIQEAGSIEWLQMNHLWGANWCIIGGPLRGPFSVKLSTSTGRSLSARDVIPGSWSPKATYTSRLNFSP 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1325 332 Gene3D - 229 327 IPR036749 -
Glsi14g1325 332 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 246 326 IPR007117 -
Glsi14g1325 332 PRINTS Expansin/Lol pI family signature 312 326 IPR007118 GO:0005576
Glsi14g1325 332 PRINTS Expansin/Lol pI family signature 216 232 IPR007118 GO:0005576
Glsi14g1325 332 PRINTS Expansin/Lol pI family signature 147 165 IPR007118 GO:0005576
Glsi14g1325 332 PRINTS Expansin/Lol pI family signature 106 121 IPR007118 GO:0005576
Glsi14g1325 332 PRINTS Expansin/Lol pI family signature 274 288 IPR007118 GO:0005576
Glsi14g1325 332 PRINTS Expansin/Lol pI family signature 124 142 IPR007118 GO:0005576
Glsi14g1325 332 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 125 233 IPR007112 -
Glsi14g1325 332 FunFam Expansin B3 93 229 - -
Glsi14g1325 332 CDD DPBB_EXPB_N 107 228 - -
Glsi14g1325 332 PANTHER EXPANSIN-B3 89 330 - -
Glsi14g1325 332 Gene3D - 94 228 IPR036908 -
Glsi14g1325 332 Pfam Lytic transglycolase 148 221 IPR009009 -
Glsi14g1325 332 SUPERFAMILY PHL pollen allergen 233 326 IPR036749 -
Glsi14g1325 332 SUPERFAMILY Barwin-like endoglucanases 102 232 IPR036908 -
Glsi14g1325 332 PRINTS Major pollen allergen Lol pI signature 145 156 IPR005795 GO:0005576|GO:0019953
Glsi14g1325 332 PRINTS Major pollen allergen Lol pI signature 253 268 IPR005795 GO:0005576|GO:0019953
Glsi14g1325 332 PRINTS Major pollen allergen Lol pI signature 302 319 IPR005795 GO:0005576|GO:0019953
Glsi14g1325 332 PRINTS Major pollen allergen Lol pI signature 183 198 IPR005795 GO:0005576|GO:0019953
Glsi14g1325 332 PRINTS Major pollen allergen Lol pI signature 205 220 IPR005795 GO:0005576|GO:0019953
Glsi14g1325 332 PRINTS Major pollen allergen Lol pI signature 237 252 IPR005795 GO:0005576|GO:0019953
Glsi14g1325 332 Pfam Expansin C-terminal domain 235 315 IPR007117 -
Glsi14g1325 332 SMART dpbb_1 143 223 IPR007112 -
Glsi14g1325 332 FunFam Beta-expansin 3 230 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1325 Glsi-ChrGlsi14 14178230 14180585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1325 102 268 Expansin Gene Family AT4G28250 78.443 3.50e-94 277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi14g1325 14 14178230 14180585 Glsi14g1325 14 14178230 14180585 ECH