Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1321 ATGGAAGATAAATCTTATTTGGAAAAATGGAATTCTGCCGCAGAAGCCATTGCAGATTCCGATAGAAATGCTTGTGGTGACTTTGACTGCAACATCTGCCTGGAGTATGTACAAGATCCAGTGGTCACTCTTTGCGGTCATCTCTTCTGCTGGCCCTGCCTCTACAAATGGCTTCGTTTCCATGGCATCGAAGAGCAGCGGAGGCCATTCTGCCCAGTATGCAAATCACAAGTTTCTCAATCCTCTCTAATTCCAATATATGGTCGAGGCCAAACACCAAGACCTTCCAAACCCACGTCCTACCATGTAGGGGTTGTCATACCTCCAAGACCATCTAGTACTGCAACTCTTTCCCAACCATCTTCCCGCCATTATCCTCATCGCCCTCAACTCTATAACTCAATTCCAGGCGGTCACCGTTCCACAAACGCATTTGATACAACAATTGGAGAGTTTGGTGCGATGATATATGCAAGGGTGTTTGGTAACCAGCTGACAAACATGCACACTTACCCCAATTCATATCAGGTGGCGGGGAACAGCAGTTCAAGGATCAGAAGGCAATTGCAGCAAGCTGATAAGTCACTGGGTAGAATCTGTTTTTTTCTCCTATGCTGCACAATTTTGTGTCTTCTCTTATTCTGA 645 0.4574 MEDKSYLEKWNSAAEAIADSDRNACGDFDCNICLEYVQDPVVTLCGHLFCWPCLYKWLRFHGIEEQRRPFCPVCKSQVSQSSLIPIYGRGQTPRPSKPTSYHVGVVIPPRPSSTATLSQPSSRHYPHRPQLYNSIPGGHRSTNAFDTTIGEFGAMIYARVFGNQLTNMHTYPNSYQVAGNSSSRIRRQLQQADKSLGRICFFLLCCTILCLLLF 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1321 214 SMART ring_2 30 74 IPR001841 -
Glsi14g1321 214 Pfam Zinc finger, C3HC4 type (RING finger) 30 74 IPR018957 GO:0046872
Glsi14g1321 214 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 211 IPR045103 GO:0005783|GO:0006511|GO:0061630
Glsi14g1321 214 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 88 IPR013083 -
Glsi14g1321 214 SUPERFAMILY RING/U-box 26 87 - -
Glsi14g1321 214 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
Glsi14g1321 214 ProSiteProfiles Zinc finger RING-type profile. 30 75 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1321 Glsi-ChrGlsi14 14165603 14166247 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1321 23 214 C3H Transcription Factor Family AT4G28270 39.713 8.78e-41 135
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi14g1321 14 14165603 14166247 Glsi14g1321 14 14165603 14166247 ECH