Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1283 ATGTCACTGCACGCTCTTAAGGAAACTCTCAGGCCTTGCACAAGTCAACCATCATCATCTATTAGCCAAAAGCAGTCTTCGATTTTCCGTGATTCCGACCTCGCAATCCCTAGGAAACCCCCAAAATCCTCTCTCACCCAGCAGCTTCGTCGCCTGCAAGACCCACTCGCTGCTCCGCCTATTCAACGTCACAATTCAGATAAGCGAGAAAGGGACCACAAAAGTGGTGAGGTCGGGGATGAGGAACAAGATGAGGACAGGGAGGCGGAAGAGGATGAGCCAGAGCTGAAGAGGGCAAAATTCTGTAGACCTAAATTGTGTCAGTTTCAGTTTGATCATACTGGACCCTTTGAGCCTCTGGTCTTGTCTTCGGATGGAGAAGTTCCAGTGGTACAGGTTCCTTCATCTATCAACTGTAGACTGCTTGAACACCAAAGAGTAGGAGTGAAGTTTCTGTATAGCTTGTATAAGAACAATCATGGAGGCATTCTTGGAGATGACATGGGTCTTGGGAAGACCATTCAAACGATAGCATTTCTTGCTGCTGTGTTTGGTAAAGATCGAGAGCATATGCCATCGGAAAACCAGGTAGTGAAAAGAAGTCCTGTCTTAATAATTTGCCCCACTTCTGTTATCCTCAATTGGGAGAGTGAATTCTCTAAATGGGCAAACTTTAGTGTTTCCATTTATCATGGTACCAACCGGGATCTGATATATGATAAATTGGAAGCGCGTGGAGTGGAGATACTTATTACCAGTTTTGACTCTTACAGAATTCATGGTAGCACCTTGTTAGATATCAATTGGGATATTGTGGTTATTGATGAGGCTCACCGGCTTAAGAATGAGAAATCAAAACTCTATAGAGCATGTTTAGAAATAAAATCCCTGAGACGTTTTGGTCTTACTGGTACCATAATGCAAAATAAGATCATGGAGTTGTTTAATCTTTTTGACTGGTTTGCACCAGGATCTCTAGGAACACGGGAACACTTTCGAGATTTCTATGATGAACCCCTAAAGCATGGTCAGAGGTCAACTGCTCCTCAGAGATTTGTCCAAATTGCCAATGAACGAAAACAACACCTTGTCACAATTCTTCATAAATATATGTTAAGAAGGACGAAAGAAGAGACCATAGGGCACCTTATGATGGGGAAGGAAGATAACATCGTGTTCTGCACCATGAGTGAATTACAAAAACGGGCATATAGGAGAATGTTACAACTTCCTGATATACAATGCCTTATAAATAAGGATTTGCCTTGTAGTTGTGGAAGCCCACTCACTCAAGTTGAATGCTGTAAGAGGATTGTACCAAATGGAATTATTTGGCCTTACATTCACAGAGATAACCCTGATGGTTGTGATTCATGCCCCTTTTGCCTTGTCCTTCCTTGCCTTGTCAAGCTCCAACAGATAAGCAATCACCTTGAGCTGATTAAGCCAAACCCCAAAGATGACCCTGACAAACAAAGAAAAGATGCAGAGTTTGCTGCTGCTGTCTTTGGCCCTGATATTGATTTGGTTGGTGGGAACATGCAGAATGAGACTTTCATGGGTCTAAGTGATGTGAAAGATTGTGGCAAAATGCGAGCACTTGAAAAACTGTTGTTTTCATGGATCTCGCAGCGTGATAAAATTCTTTTGTTCAGCCATTCTGTAAGGATGCTGGACATACTGGAGAAATTTCTCATAAGAAAAGGCTACTGCTTCTCAAGACTTGATGGATCCACTCCAGCTAATTTACGGCAGTCTCTGGTTGATGACTTCAACTCAAGTCCAAGCAAACAAGTATTCCTGATATCAACTCGAGCTGGGGGGCTTGGATTGAACCTTGTCAGTGCAAATCGTGTGGTGATATTTGATCCCAACTGGAATCCTGCTCAAGACTTACAGGCGCAGGACAGGTCCTTCCGATTTGGGCAGAAGCGGCATGTGGTGGTATTCCGTTTTCTTGCAGCTGGTTCACTTGAAGAGCTTGTCTATTCTCGTCAGGTGTACAAGCAGCAACTATCAAACATTGCTGTCTCTGGAAAAATGGAAAAACGATATTTTGAAGGCGTCCAGGACTGCAAGGAATTTAAAGGGGAACTTTTTGGAATTTGCAATTTATTTCGAGATTTATCTGATAAGCTGTTTACCAGTGACATAATTCATTTGCACAAGGAGGGAAAAGAAGATAGGCATAGAACAGAACTAGAGAAAAAATGTGTTCCGTCAGAAGAAGCTAATATATTAGTATCAGAGTCTGAGAACAGGTTAAGTACGGATTCTGAGAGGACTTCAACCAGTAAAGCAGATCTCAAAGACCTTGGCATTGTCTACGCTCATCGCAATGAAGATGTTGTCAACTTTGGACCTGGGATTCAGGGTAGTGATAGCGTAAGAATGCCCAGCATCCCTATTGTCCAGAGAAAGAAACCAGAGTGTGTAGGTAAAAAACAGACAGTTCCTGTAATCGATGAGAGGAAGAGAACCCAATATAGCCTGCTCGCTCGGTTTATGGGCATGGGAGACCTTGAATTTAGCAAGTGGTTATTATCTGCGACTCCAATGGAAAGAGAGAGAGTGCTTCAAGACTACAAGAAGAGAAAGAAGATACCAAATGGTTGA 2616 0.4274 MSLHALKETLRPCTSQPSSSISQKQSSIFRDSDLAIPRKPPKSSLTQQLRRLQDPLAAPPIQRHNSDKRERDHKSGEVGDEEQDEDREAEEDEPELKRAKFCRPKLCQFQFDHTGPFEPLVLSSDGEVPVVQVPSSINCRLLEHQRVGVKFLYSLYKNNHGGILGDDMGLGKTIQTIAFLAAVFGKDREHMPSENQVVKRSPVLIICPTSVILNWESEFSKWANFSVSIYHGTNRDLIYDKLEARGVEILITSFDSYRIHGSTLLDINWDIVVIDEAHRLKNEKSKLYRACLEIKSLRRFGLTGTIMQNKIMELFNLFDWFAPGSLGTREHFRDFYDEPLKHGQRSTAPQRFVQIANERKQHLVTILHKYMLRRTKEETIGHLMMGKEDNIVFCTMSELQKRAYRRMLQLPDIQCLINKDLPCSCGSPLTQVECCKRIVPNGIIWPYIHRDNPDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPKDDPDKQRKDAEFAAAVFGPDIDLVGGNMQNETFMGLSDVKDCGKMRALEKLLFSWISQRDKILLFSHSVRMLDILEKFLIRKGYCFSRLDGSTPANLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVVVFRFLAAGSLEELVYSRQVYKQQLSNIAVSGKMEKRYFEGVQDCKEFKGELFGICNLFRDLSDKLFTSDIIHLHKEGKEDRHRTELEKKCVPSEEANILVSESENRLSTDSERTSTSKADLKDLGIVYAHRNEDVVNFGPGIQGSDSVRMPSIPIVQRKKPECVGKKQTVPVIDERKRTQYSLLARFMGMGDLEFSKWLLSATPMERERVLQDYKKRKKIPNG 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1283 871 Pfam Helicase conserved C-terminal domain 530 642 IPR001650 -
Glsi14g1283 871 MobiDBLite consensus disorder prediction 9 30 - -
Glsi14g1283 871 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 153 324 IPR014001 -
Glsi14g1283 871 MobiDBLite consensus disorder prediction 1 96 - -
Glsi14g1283 871 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 378 696 IPR027417 -
Glsi14g1283 871 Gene3D - 120 373 IPR038718 -
Glsi14g1283 871 MobiDBLite consensus disorder prediction 63 80 - -
Glsi14g1283 871 FunFam DNA excision repair protein ERCC-6-like 2 isoform X1 122 373 - -
Glsi14g1283 871 SMART helicmild6 559 642 IPR001650 -
Glsi14g1283 871 PANTHER SNF2/RAD54 FAMILY MEMBER 16 807 - -
Glsi14g1283 871 SMART ultradead3 137 332 IPR014001 -
Glsi14g1283 871 CDD SF2_C_SNF 528 653 - -
Glsi14g1283 871 Gene3D - 386 758 IPR027417 -
Glsi14g1283 871 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 533 686 IPR001650 -
Glsi14g1283 871 Pfam SNF2-related domain 157 414 IPR000330 GO:0005524|GO:0140658
Glsi14g1283 871 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 128 374 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1283 Glsi-ChrGlsi14 13836095 13842033 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1283 546 672 RAD5 or RAD16-like Gene Family AT1G11100 37.008 3.50e-20 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Glsi14g1283 SNF2_N 1.2e-52 CL0023