Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1279 ATGGTATGCTTGGGATTTGATATGGTTGCCACTGAAAAATTGGATTTTTGGTTGTTTAAGAGGAGGGGACTAGGGTTTGTATTCCAGATTGTATTAGGGTGGTGGGCTGTTCTACTGTTCCTTCGTCCTGTGGCGGGTCTGAGGCCGTTAAGAGAGAGAACTCGGTCATGGGGCGATGAGTGGCTATTTACAAGAAAAGATGAAAGTGAGATAGGTTCATTTTCACAATGGAACATAACAGGAACTTACAGAGGGAGTTGGAAGTTTTTAGATACCACAAATGGCTCTTCCAGATTTTCAGACATCAGAAAAACAGATGGCAATTCTGTAATTGAATTATTTAGTACACCCACAAAAATAACTGGTGTGCATTATGTTCAGGGGGTAGTTATTTTCCATGATGTGTTTGACAACGAATACAATGTTGGTGGTGCTCAAATCAGAGTAGAAGGTGTATATATATGGCCTTTTAGACAGCTTCGAATGGTAGCCAACAGTGGAAAAGAGGGAGAATCGAATCAGGATGAAGATTATATTTTATCTAATCCATATCATTTGCTTGGAGTGTTCTCATCTCAAGTATTCCAAGAATCTTCACGAGATAAGATGTGGAGAAGAAAACATTCTCCAATGTATGACATGGAGAAACATTGTAATATTGAAATTGCTGCACAGATTTCACGCCTGTCATTGTCAAAAAATGACGGGGATCATGATTGTTTCCACCTGGAAGGGTTAATGGAGAGTCCCTCAGTGGATGATGATGGGGACTGCTTCTCACCTTTGGTGTTAAATGCAACTTCTGTTAACATTGAGGTCTACTATAACAAAGCAGTGAACTACACTTTGATGGTTACCTTTATCTCTTTCTTGCAAGTTCTTCTATTGATTCGGCAAATGGAGCACAGCAACACTCAATCTGGGGCTGCTAAGGTTTCAATATTAATGATTGGCCAACAGGCTATTATGGATGCTTATCTTTGCCTTTTACATCTGACTGCAGGAATACTTGTTGAATCCTTGTTTAATGCTTTTGCAACTGCTGCATTTTTCAAGTTTGTGGTCTTCTCAATATTTGAGATGAGATATCTCCTTGCCATATGGAAGGCAAGTAGGCCTTTGAGTAGTGGGGAAGGCTGGGAGACAATGAGGCGCGAGCTTTCAGTTTTATACAGTCGTTTCTATGGGATCCTGTTGGGAGGAATTCTGCTCATGTATGAGTTCCATAATCATTTGAGACCTATTCTTCTTCTTATGTACACATTTTGGATTCCTCAGATAATCACCAATGTTGTTCGTGATTCCCGCAAACCATTGCATCCTCATTATATTTTAGGGGTAACTGTCACTCGGCTAGCAATCCCGTTATATATTTTTGGTTGCCCAAACAACTTCATGCGCATTGAACCAGACAAGAGCTGGTGTATTTGTTTGGCTGTATTTATTGGACTTCAGGCTGCCATTCTTCTACTTCAGAACTATTTGGGGTCCCGTTGGTTCATTCCTCGTCAGATTCTACCTGAAAAATACAGCTATTATAGGAGATTTGGTCAAAATACAAGTCATGCTACAGACTGTGTTATTTGCATGACGGCTATTGATCTTCCTCAGCGATCAAATGATTGCATGGTGACACCTTGTGAGCATTTCTTCCACTCTGGTTGTTTGCAAAGATGGATGGATATAAAGATGGAGTGCCCAACTTGCCGACGCCCATTGCCTCCTGCCTAG 1731 0.4084 MVCLGFDMVATEKLDFWLFKRRGLGFVFQIVLGWWAVLLFLRPVAGLRPLRERTRSWGDEWLFTRKDESEIGSFSQWNITGTYRGSWKFLDTTNGSSRFSDIRKTDGNSVIELFSTPTKITGVHYVQGVVIFHDVFDNEYNVGGAQIRVEGVYIWPFRQLRMVANSGKEGESNQDEDYILSNPYHLLGVFSSQVFQESSRDKMWRRKHSPMYDMEKHCNIEIAAQISRLSLSKNDGDHDCFHLEGLMESPSVDDDGDCFSPLVLNATSVNIEVYYNKAVNYTLMVTFISFLQVLLLIRQMEHSNTQSGAAKVSILMIGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKASRPLSSGEGWETMRRELSVLYSRFYGILLGGILLMYEFHNHLRPILLLMYTFWIPQIITNVVRDSRKPLHPHYILGVTVTRLAIPLYIFGCPNNFMRIEPDKSWCICLAVFIGLQAAILLLQNYLGSRWFIPRQILPEKYSYYRRFGQNTSHATDCVICMTAIDLPQRSNDCMVTPCEHFFHSGCLQRWMDIKMECPTCRRPLPPA 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1279 576 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 514 576 IPR013083 -
Glsi14g1279 576 Pfam Ring finger domain 525 570 IPR001841 -
Glsi14g1279 576 PANTHER RING ZINC FINGER PROTEIN 132 575 - -
Glsi14g1279 576 SMART ring_2 526 569 IPR001841 -
Glsi14g1279 576 FunFam E3 ubiquitin-protein ligase, putative 512 576 - -
Glsi14g1279 576 SMART ringv_2 525 570 IPR011016 GO:0008270
Glsi14g1279 576 CDD RING-H2_TUL1-like 520 575 - -
Glsi14g1279 576 ProSiteProfiles Zinc finger RING-type profile. 526 570 IPR001841 -
Glsi14g1279 576 SUPERFAMILY RING/U-box 525 575 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1279 Glsi-ChrGlsi14 13771835 13782525 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1279 526 573 C3H Transcription Factor Family AT4G12190 37.500 3.02e-07 46.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi14g1279 14 13771835 13782525 Glsi14g1279 14 13771835 13782525 ECH