Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1275 ATGGATGGGCTTAAGCCAAAGATGGAGATGGAGATGGAGAGGCTAGTGAAGAGGGAGGCCTTGGAGGATTACGATGACGAAAAAGGGTACTTGAAGGAGGACAAGAAGAAGAAATGGTCTGGGAAGAAAGGGTCTAGTGGGGGTGGAGGAAGTGGTGGTATGCGGTGTTGTCAAGCAGAGAAGTGCACTGCAGAGCTTAATGATGCGAAGCCGTATCATAAGAGGCACAAGGTATGTGAATACCATGCTAAGGCTCCGGTAGTGATTGTGGATGGCACTCGACAACGGTTTTGTCAGCAATGCAGCAGATTCCATGAGTTAGCTGAATTTGATGAGACGAAAAGAAGTTGCCGGATGCGTTTGGCCGGACACAATGAACGGCGACGGAAGAACTCAGTGTCTGAGTCTCAAGCAGAAGGCTCAAGCCGCAAGGGGACAAGCACTAGTACTCAGTTGAAGGACATTATTTGTGAGCAGCTTGATGATAGGGGGAGAATTCAGATCACCATCCAAGAAAAAGCCGCTTACAAACATTTCCAGATAAGATGA 549 0.4809 MDGLKPKMEMEMERLVKREALEDYDDEKGYLKEDKKKKWSGKKGSSGGGGSGGMRCCQAEKCTAELNDAKPYHKRHKVCEYHAKAPVVIVDGTRQRFCQQCSRFHELAEFDETKRSCRMRLAGHNERRRKNSVSESQAEGSSRKGTSTSTQLKDIICEQLDDRGRIQITIQEKAAYKHFQIR 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1275 182 FunFam Squamosa promoter-binding-like protein 14 48 118 - -
Glsi14g1275 182 SUPERFAMILY SBT domain 55 134 IPR036893 GO:0003677|GO:0005634
Glsi14g1275 182 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 42 150 IPR044817 GO:0003677
Glsi14g1275 182 MobiDBLite consensus disorder prediction 121 150 - -
Glsi14g1275 182 MobiDBLite consensus disorder prediction 135 150 - -
Glsi14g1275 182 Gene3D - 48 118 IPR036893 GO:0003677|GO:0005634
Glsi14g1275 182 ProSiteProfiles Zinc finger SBP-type profile. 54 131 IPR004333 GO:0003677
Glsi14g1275 182 Pfam SBP domain 57 130 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1275 Glsi-ChrGlsi14 13756929 13758244 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1275 41 168 SBP-box Gene Family AT1G53160 53.906 1.39e-42 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Glsi14g1275 SBP 4.5e-32 No_clan