Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1274 ATGCCTGCCCAGAAACGGTCATTGGCAGAGAGTCTGGACGAGGGGGAGACTTCACAACGCCATGTCAAGCAATCTCACCGCGACCGAGAGTTCCAAGCTGAGGAGCATCTAGAGGAGGATAATGAGCAAGGAGAGCTGCAGGAACAAGGAGAAGGAGGAGAAGCAGTACAGCAACACCAGCGAGATTATGTCAAGGAAAAAGCAGAGGATTCTGAAGAAAACCCATCTAATGGCTCTGAAGAAAAACCCGAATTTGTATTTGTGGAACTTCCCGAAATTCGTAAAGATGTCCAATGTCCAATTTGCCTTGGTATTATTAAGAAAACACGAACTGTTATGGAATGCTTGCACCGGTTTTGCAGGGAATGCATTGACAAGTCAATGCGACTAGGGAATAATGAATGCCCTGCTTGCCGCACACACTGTGCTAGTCGTCGTTCTTTAAGAGATGATCCGAACTATGATGCCCTAATTGCAGCATTATATCCAGATATAGAGAAGTATGAGGAAGAGGAGCTTGAATTTCGTGAAGAGGAGAAGACCCGCAATAAGCAGATTCAGGCTTCAATAGCAAAAGTAGTTGAGCGGCAATCTGAAGCATTGGTAAAGAGACGTAGTAAAGATACACCTGGTGCATTTGTGACAAGATCACAGCGGAATCATCGAATTGCTCATTCTAGGAGGCAAAACCAAGGAATTGAGCTTCAAGAATCTGAAGATAATGAGGAGGAAAATGAAAACAAGGGAGAAAAAGACTCATCTTCCACTGATGAGCAGTGTACAGAACTCAGGCAGAGAAGGCAAAAGAGACACGCCAGACTTCGTCCTTCTCAATCTTCATCATCAATGGCTAGCCCAGATGGTGGTTGCCTAGAAAGCGATATGGATTTAAGTAGAGAAAATAGAGGACTTTCTTCAAGGCAGGTATCAAAGCCTCGTAAATTTACTTGGGGAAGAGGTGGTTTTAGGAGTCACACACGATATGGCAGTGGCAGTGGTAGTAATAACAAGATTTCCCGCAGCAATCGCTTGTCTAAGTTAATTGATTATCTTCGAAGCTTGGATGAAAACACTGATGAGATAGATGTCCATCTCATGCTTGTTTCTTTGGACAAACAAAGTACCCCAACTTTGCAGCAGCCACACCTTTGCTGCAGGCCAACTTTGTCTGTCAAGCACCTTTGTGAGTATGTAGCTAGTCAGACATCTTTGCCAGCTGAAGAAGTTCAGATATTGGCAGTTAAAGGATGCTGCAGTACAAATTGTGGTAAGTCAGCTGATGAGAACTTGATGTATGATGAACTAACAATGTTGATCTTAGATCCATGCATAGATGAACTGGAAGTTTTGCAAGCACATGAAACCTTGTCTGGGCTTAAATCCAAATGCATATCTAAAAGCGAGCATTTGATTCTGGCATATAGGCAGAAGAAGACAATATAG 1443 0.4331 MPAQKRSLAESLDEGETSQRHVKQSHRDREFQAEEHLEEDNEQGELQEQGEGGEAVQQHQRDYVKEKAEDSEENPSNGSEEKPEFVFVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPDIEKYEEEELEFREEEKTRNKQIQASIAKVVERQSEALVKRRSKDTPGAFVTRSQRNHRIAHSRRQNQGIELQESEDNEEENENKGEKDSSSTDEQCTELRQRRQKRHARLRPSQSSSSMASPDGGCLESDMDLSRENRGLSSRQVSKPRKFTWGRGGFRSHTRYGSGSGSNNKISRSNRLSKLIDYLRSLDENTDEIDVHLMLVSLDKQSTPTLQQPHLCCRPTLSVKHLCEYVASQTSLPAEEVQILAVKGCCSTNCGKSADENLMYDELTMLILDPCIDELEVLQAHETLSGLKSKCISKSEHLILAYRQKKTI 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1274 480 MobiDBLite consensus disorder prediction 1 84 - -
Glsi14g1274 480 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 169 IPR013083 -
Glsi14g1274 480 ProSitePatterns Zinc finger RING-type signature. 115 124 IPR017907 -
Glsi14g1274 480 MobiDBLite consensus disorder prediction 58 84 - -
Glsi14g1274 480 PANTHER OS11G0578200 PROTEIN 1 478 IPR044592 -
Glsi14g1274 480 SUPERFAMILY RING/U-box 91 153 - -
Glsi14g1274 480 MobiDBLite consensus disorder prediction 247 265 - -
Glsi14g1274 480 CDD RING-HC_RING1-like 96 161 - -
Glsi14g1274 480 ProSiteProfiles Zinc finger RING-type profile. 99 139 IPR001841 -
Glsi14g1274 480 Pfam Zinc finger, C3HC4 type (RING finger) 98 138 - -
Glsi14g1274 480 MobiDBLite consensus disorder prediction 9 36 - -
Glsi14g1274 480 SMART ring_2 99 138 IPR001841 -
Glsi14g1274 480 MobiDBLite consensus disorder prediction 201 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1274 Glsi-ChrGlsi14 13739878 13745893 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1274 92 162 C3H Transcription Factor Family AT3G23060 35.135 5.33e-07 50.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi14g1274 14 13739878 13745893 Glsi14g1274 14 13739878 13745893 ECH