Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1271 ATGAGCAGCGTCTGTGCTGAGCAGCACAAGTTTGTTCCCTCCCGCCACATCCTTTCTCCCAACAAATCCCTCATCAGAGACATTGACATCCCTCCCAGGAAGCTCCTCACTCGCCGTCCTTCCACCACCCACGACGTCCCCCTCGACATGTACTCTTCCGACGACACCTTCCTCCAGAAATTCCTTCCCCGCAACAACATCGTGGACTCCGATGACGATGACTCTGATCCATACTCCTCCGACCACTTCCGCATGTACGAATTCAAGGTCCGCCGGTGCACCCGCAGCCGCAGCCATGACTGGACCGACTGCCCCTTTGCTCACCCCGGCGAGAAAGCTCGCCGCCGTGACCCCAGGCGCTACCACTACTCCGGTACTGTCTGTCCCGAGTATCGCCGTGGTGGATGCAGCAGCGGAGATGGCTGTGAGTTTGCACACGGTGTTTTTGAGTGTTGGCTTCACCCATCTAGGTACCGAACCGAAGCTTGTAAAGATGGGAAGAATTGTAAGCGAAAAGTTTGCTTCTTTGCTCATACTCCTCGCCAACTCAGGATTCTGCCTGTCAATTCGCACAATTCTTCACCTGACATGTCGTGCAAGAGCAACAAATTCTTGAACCCAGCATCGGGATCAACCAATTGCTGCTTGTTTTGCCATTGCGCTGCTACTTCCTCTCCAACTTCCACCCTATTTGGCACTTCCCATTCCCATTTTTCCCCACCATTGTCGCCGTCGACGACCCCCGTCTCTCCGCCTCTTTCCCCCGTGAAACGCCGCTCTGCAAATGGAGTGTCCCCTATTTCTCGATATTGTGACAGATTTGCAGGATCTGAGACATCGGGGGGGTTGAATCGTGGGGTGGTGAGCTATAAAGATGCGCTCACTGAGTTGATGAGCTCCTTGGAGGGTCTCAATTTAATTGAAGTTGCTTCGCCTGTTTCTGCTACAAAAGCACTAAATCTGCCTTGGCTCGATGTTTCTCTTAATTCTGAAGATCAGCAGCAGCAGTACATTCTTTCGCCTACCACTTCTTTCAACTGTGAAGATCAGCTGCAGCAGCAGCAGTACATTCTTTCGCCTACCACTTCTTTCAATTGTGAAGATCAGCAGCAGCAGCAGCAATTCATTCTTTCGCCTACCACTTATTTCAATTGTGAAGATCAGCAGCAGCAGCAGTTCATTCTTTCGCCTACCACTTCTTTCATTAATTGCGAAGATCAGCAGCAGCAGTTCATTCTTTCACCATCTGCTCAGACAACCCCAGCCACCTGTGTGTCCGCAAGCTTTTCCAATGACAATGGGTCCTCCTCCTGCCCCGCCCCAGATCTCGGGTGGGTCAATGAGCTGCTGATGTAG 1356 0.5192 MSSVCAEQHKFVPSRHILSPNKSLIRDIDIPPRKLLTRRPSTTHDVPLDMYSSDDTFLQKFLPRNNIVDSDDDDSDPYSSDHFRMYEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRYHYSGTVCPEYRRGGCSSGDGCEFAHGVFECWLHPSRYRTEACKDGKNCKRKVCFFAHTPRQLRILPVNSHNSSPDMSCKSNKFLNPASGSTNCCLFCHCAATSSPTSTLFGTSHSHFSPPLSPSTTPVSPPLSPVKRRSANGVSPISRYCDRFAGSETSGGLNRGVVSYKDALTELMSSLEGLNLIEVASPVSATKALNLPWLDVSLNSEDQQQQYILSPTTSFNCEDQLQQQQYILSPTTSFNCEDQQQQQQFILSPTTYFNCEDQQQQQFILSPTTSFINCEDQQQQFILSPSAQTTPATCVSASFSNDNGSSSCPAPDLGWVNELLM 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1271 451 ProSiteProfiles Zinc finger C3H1-type profile. 123 149 IPR000571 GO:0046872
Glsi14g1271 451 FunFam Zinc finger CCCH domain-containing protein 66 80 148 - -
Glsi14g1271 451 Gene3D - 122 186 - -
Glsi14g1271 451 SMART c3hfinal6 157 180 IPR000571 GO:0046872
Glsi14g1271 451 SMART c3hfinal6 122 148 IPR000571 GO:0046872
Glsi14g1271 451 MobiDBLite consensus disorder prediction 241 261 - -
Glsi14g1271 451 PANTHER UNKEMPT FAMILY MEMBER 56 450 IPR045234 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1271 Glsi-ChrGlsi14 13722510 13723865 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1271 72 245 C2H2 Transcription Factor Family AT5G12850 50.000 4.82e-51 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Glsi14g1271 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi14g1271 14 13722510 13723865 Glsi14g1271 14 13722510 13723865 ECH